The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
| Gene ID | Description |
|---|---|
| Ama13142 | - |
| Ama13144 | STG PROTEIN |
| Ama13145 | - |
| Ama13148 | - |
| Ama13149 | 3-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE |
| Ama13150 | |
| Ama13151 | CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 57 |
| Ama13152 | SPERMATOGENESIS ASSOCIATED 11-RELATED |
| Ama13153 | |
| Ama13154 | |
| Ama13155 | |
| Ama13156 | GRIP AND COILED-COIL DOMAIN-CONTAINING PROTEIN 1 |
| Ama13157 | |
| Ama13158 | |
| Ama13159 | BONUS, ISOFORM C-RELATED |
| Ama13160 | ZINC FINGER PROTEIN |
| Ama13161 | PRESEQUENCE PROTEASE |
| Ama13162 | ACTIN |
| Ama13163 | ACTIN |
| Ama13164 | HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED |
| Ama13165 | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 8 |
| Ama13167 | N-TERMINAL ACETYLTRANSFERASE-RELATED |
| Ama13168 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |
| Ama13171 | NINJURIN-RELATED |
| Ama13172 | |
| Ama13173 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| Ama13174 | SULFOTRANSFERASE SULT |
| Ama13176 | |
| Ama13177 | GLYCOSYLTRANSFERASE 14 FAMILY MEMBER |
| Ama13178 | PHOSPHATIDYLINOSITOL TRANSFER PROTEIN |
| Ama13183 | SYNTENIN RELATED |
| Ama13184 | ADIPOR/PROGESTIN RECEPTOR-RELATED |
| Ama13185 | ZINC FINGER CCHC DOMAIN-CONTAINING PROTEIN 7 |
| Ama13187 | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 8 |
| Ama13188 | XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBER |
| Ama13190 | |
| Ama13191 | |
| Ama13193 | |
| Ama13194 | ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE |
| Ama13195 | |
| Ama13196 | |
| Ama13197 | PIKACHURIN-LIKE PROTEIN |
| Ama13199 | TYROSINE-PROTEIN KINASE RECEPTOR |
| Ama131_5db7b01a | HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED |
| Ama13200 | PARANEOPLASTIC ANTIGEN |
| Ama13201 | |
| Ama13205 | CELL FATE DETERMINING PROTEIN MAB21-RELATED |
| Ama13206 | KELCH PROTEIN |
| Ama13207 | THREE PRIME REPAIR EXONUCLEASE 1, 2 |
| Ama13208 |
