The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama12746 | FERREDOXIN-RELATED |
Ama12747 | SAM DOMAIN-CONTAINING PROTEIN-RELATED |
Ama12748 | SOLUTE CARRIER FAMILY 31 COPPER TRANSPORTERS |
Ama12749 | BAP28 |
Ama12750 | BAP28 |
Ama12751 | |
Ama12752 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED |
Ama12753 | TOL-PAL SYSTEM PROTEIN TOLA |
Ama12754 | |
Ama12756 | G-PROTEIN COUPLED RECEPTOR |
Ama12757 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
Ama12759 | |
Ama12760 | DYNEIN HEAVY CHAIN 1, AXONEMAL-LIKE PROTEIN |
Ama12765 | |
Ama12766 | NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED |
Ama12767 | THIOSULFATE SULFERTANSFERASE |
Ama12768 | |
Ama12769 | |
Ama12770 | |
Ama12771 | |
Ama12772 | TATA-BOX BINDING PROTEIN |
Ama12773 | INTEGRASE CORE DOMAIN CONTAINING PROTEIN |
Ama12774 | INHIBITOR OF APOPTOSIS |
Ama12775 | RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR |
Ama12776 | |
Ama12777 | |
Ama12778 | TOLL-LIKE RECEPTOR |
Ama12779 | |
Ama12781 | UDP-GLUCOSE 4-EPIMERASE |
Ama12782 | DNA LIGASE 4 |
Ama12783 | FERREDOXIN/ADRENODOXIN |
Ama12784 | ZINC FINGER PROTEIN |
Ama12785 | SERINE-THREONINE PROTEIN KINASE |
Ama12786 | |
Ama12788 | |
Ama12794 | ANKYRIN REPEAT PROTEIN |
Ama12795 | RIBOSOMAL PROTEIN L13 |
Ama12796 | PHOSPHOLIPASE A-2-ACTIVATING PROTEIN |
Ama12797 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 13 |
Ama12798 | TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN |
Ama127_5db7b01a | TETRASPANIN |
Ama12800 | |
Ama12801 | SOMETHING ABOUT SILENCING PROTEIN 10-RELATED |
Ama12802 | SPERMATOGENESIS-ASSOCIATED PROTEIN 6 SPATA6 |
Ama12803 | |
Ama12804 | |
Ama12805 | RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY |
Ama12806 | NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED |
Ama12807 | NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED |
Ama12808 | LP04239P |