About Archivesica marissinica

The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Archivesica marissinicaMolluscaDeep-Sea ClamHydrothermal vent1,361 Haima cold seep in the South China Sea2291877

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
ASM1484369v11.5GbChromosome2020JABXNX01Hong Kong Baptist UniversityPRJNA62989893.50%28,949

References
TitleJournalPubmed ID
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic ClamMolecular Biology and Evolution32956455

Gene Information

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Gene IDDescription
Ama12440MYOSIN REGULATORY LIGHT CHAIN 2
Ama12441DOUBLESEX AND MAB-3 RELATED TRANSCRIPTION FACTOR DMRT
Ama12442REVERSE TRANSCRIPTASES
Ama12443CYTOSOLIC CARBOXYPEPTIDASE
Ama12444LYSOSOMAL-ASSOCIATED TRANSMEMBRANE PROTEIN
Ama12445COLLAGEN ALPHA
Ama12446GLUTAMINE SYNTHETASE
Ama12447DNAJ PROTEIN ERDJ3A
Ama12448LEUCOKININ RECEPTOR-RELATED
Ama12449LEUCOKININ RECEPTOR-RELATED
Ama12450CYSTEINE PROTEASE ATG4
Ama12451ADP RIBOSYLATION FACTOR-RELATED
Ama12452UBIQUITIN-CONJUGATING ENZYME E2
Ama12453RHO FAMILY GTPASE
Ama12454SCAVENGER RECEPTOR CLASS F
Ama12455PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Ama12457
Ama12458
Ama12459
Ama12460
Ama12461GLYCOSYLTRANSFERASE
Ama12462CXC DOMAIN-CONTAINING PROTEIN-RELATED
Ama12463CXC DOMAIN-CONTAINING PROTEIN-RELATED
Ama12464
Ama12466ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED
Ama12467
Ama12468
Ama12470TRANSMEMBRANE PROTEIN 214
Ama12471
Ama12473
Ama12474SERINE/THREONINE-PROTEIN KINASE PLK
Ama12477PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4
Ama12478PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Ama12479REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Ama12483CYCLIC NUCLEOTIDE PHOSPHODIESTERASE
Ama12484UNCHARACTERIZED
Ama12485NUCLEOTIDE KINASE
Ama12486PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
Ama12489ANNEXIN
Ama12491PHENYLALANYL-TRNA SYNTHETASE
Ama12492GLUTARYL-COA DEHYDROGENASE, MITOCHONDRIAL
Ama12493DIOXYGENASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G02910)-RELATED
Ama12494TUMOR NECROSIS FACTOR FAMILY MEMBER
Ama12495
Ama12496REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Ama12497
Ama12498L1 TRANSPOSABLE ELEMENT-RELATED
Ama12499PEPTIDASE
Ama124_5db7b01a
Ama12500
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