The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
| Gene ID | Description |
|---|---|
| Ama12300 | MITOCHONDRIAL INNER MEMBRANE PROTEASE |
| Ama12301 | DELTA(14)-STEROL REDUCTASE |
| Ama12303 | |
| Ama12304 | SPHINGOSINE KINASE |
| Ama12307 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| Ama12308 | D-AMINO ACID OXIDASE |
| Ama12310 | DNA2/NAM7 HELICASE FAMILY MEMBER |
| Ama12313 | TUBULIN |
| Ama12314 | TRANSMEMBRANE PROTEIN 214 |
| Ama12315 | PARANEOPLASTIC ANTIGEN |
| Ama12316 | |
| Ama12317 | |
| Ama12318 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| Ama12319 | |
| Ama12320 | PUTATIVE-RELATED |
| Ama12321 | |
| Ama12322 | D-AMINO ACID OXIDASE |
| Ama12324 | D-AMINO ACID OXIDASE |
| Ama12325 | D-AMINO ACID OXIDASE |
| Ama12326 | TRANSPOSABLE ELEMENT-RELATED |
| Ama12328 | DNA2/NAM7 HELICASE FAMILY MEMBER |
| Ama12329 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| Ama12330 | TRANSPOSABLE ELEMENT-RELATED |
| Ama12331 | DNA2/NAM7 HELICASE FAMILY MEMBER |
| Ama12332 | DNA2/NAM7 HELICASE FAMILY MEMBER |
| Ama12333 | DNA2/NAM7 HELICASE FAMILY MEMBER |
| Ama12334 | RIBONUCLEASE |
| Ama12335 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Ama12336 | DNA2/NAM7 HELICASE FAMILY MEMBER |
| Ama12337 | RIBONUCLEASE |
| Ama12338 | D-AMINO ACID OXIDASE |
| Ama12340 | |
| Ama12341 | RIBONUCLEASE |
| Ama12342 | DNA2/NAM7 HELICASE FAMILY MEMBER |
| Ama12343 | OSJNBA0004B13.7 PROTEIN |
| Ama12344 | DNA2/NAM7 HELICASE FAMILY MEMBER |
| Ama12349 | PHOSPHORYN, PUTATIVE-RELATED-RELATED |
| Ama12350 | CELL DIVISION PROTEIN KINASE |
| Ama12351 | - |
| Ama12352 | TRANSIENT RECEPTOR POTENTIAL CHANNEL |
| Ama12353 | TRANSIENT RECEPTOR POTENTIAL CHANNEL |
| Ama12355 | PROTEIN CBG22215 |
| Ama12357 | |
| Ama12358 | |
| Ama12359 | HEH2P |
| Ama12360 | DNA POLYMERASE |
| Ama12361 | CADHERIN-23 |
| Ama12362 | COILED-COIL DOMAIN-CONTAINING PROTEIN 24 |
| Ama12363 | CADHERIN-23 |
| Ama12364 |
