The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
| Gene ID | Description |
|---|---|
| Ama12027 | |
| Ama12028 | |
| Ama12029 | 40S RIBOSOMAL PROTEIN S28 |
| Ama12030 | LEUCINE-RICH REPEAT AND IQ DOMAIN-CONTAINING PROTEIN 1-RELATED |
| Ama12031 | |
| Ama12032 | TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED |
| Ama12033 | PAK1 INTERACTING PROTEIN 1 |
| Ama12034 | GROWTH ARREST AND DNA DAMAGE-INDUCIBLE PROTEIN GADD45 |
| Ama12035 | |
| Ama12036 | GROWTH ARREST AND DNA DAMAGE-INDUCIBLE PROTEIN GADD45 |
| Ama12037 | GROWTH ARREST AND DNA DAMAGE-INDUCIBLE PROTEIN GADD45 |
| Ama12038 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Ama12039 | - |
| Ama12040 | UNCHARACTERIZED |
| Ama12041 | UNCHARACTERIZED |
| Ama12043 | |
| Ama12055 | |
| Ama12056 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Ama12058 | |
| Ama12059 | WHEY ACDIC PROTEIN WAP |
| Ama12060 | |
| Ama12061 | |
| Ama12062 | |
| Ama12063 | |
| Ama12065 | |
| Ama12069 | PROTHORACICOTROPIC HORMONE, ISOFORM F |
| Ama12072 | |
| Ama12073 | AG-1 BLOOD STAGE MEMBRANE PROTEIN HOMOLOGUE |
| Ama12074 | VERTNIN |
| Ama12075 | |
| Ama12076 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |
| Ama12078 | VERTNIN |
| Ama12079 | ULP_PROTEASE DOMAIN-CONTAINING PROTEIN |
| Ama12081 | |
| Ama12082 | INTEGRIN BETA-1-BINDING PROTEIN 1 |
| Ama12083 | |
| Ama12085 | |
| Ama12086 | INTEGRIN BETA-1-BINDING PROTEIN 1 |
| Ama12087 | HILLARIN |
| Ama12088 | |
| Ama12089 | HILLARIN |
| Ama12090 | ENTEROCHELIN ESTERASE-RELATED |
| Ama12091 | |
| Ama12092 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| Ama12093 | |
| Ama12094 | |
| Ama12095 | MAP KINASE KINASE KINASE SSK2-RELATED-RELATED |
| Ama12097 | |
| Ama12098 | |
| Ama12099 | EG:80H7.2 PROTEIN |
