The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
| Gene ID | Description |
|---|---|
| Ama11696 | T-CELL ACUTE LYMPHOCYTIC LEUKEMIA/STEM CELL LEUKEMIA-RELATED |
| Ama11697 | |
| Ama11698 | HEH2P |
| Ama11699 | LD44762P |
| Ama116_5db7b01a | UNCHARACTERIZED |
| Ama11700 | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS |
| Ama11701 | BLR6086 PROTEIN |
| Ama11702 | BLR6086 PROTEIN |
| Ama11703 | PROFILIN |
| Ama11704 | |
| Ama11706 | |
| Ama11708 | THAP DOMAIN PROTEIN |
| Ama11709 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN |
| Ama11710 | BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE |
| Ama11711 | |
| Ama11712 | RIBULOKINASE |
| Ama11713 | - |
| Ama11714 | - |
| Ama11715 | - |
| Ama11717 | E3 UBIQUITIN-PROTEIN LIGASE MIB2 |
| Ama11719 | |
| Ama11720 | ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT |
| Ama11721 | AMYLOID PROTEIN-BINDING PROTEIN 2 |
| Ama11723 | |
| Ama11730 | |
| Ama11731 | T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN |
| Ama11732 | |
| Ama11733 | |
| Ama11734 | NARDILYSIN |
| Ama11735 | SH3 AND MULTIPLE ANKYRIN REPEAT DOMAINS PROTEIN |
| Ama11736 | SH3 AND MULTIPLE ANKYRIN REPEAT DOMAINS PROTEIN |
| Ama11737 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Ama11739 | |
| Ama11740 | TYROSINE-PROTEIN KINASE RECEPTOR |
| Ama11741 | UNCHARACTERIZED |
| Ama11742 | SODIUM-BILE ACID COTRANSPORTER |
| Ama11745 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
| Ama11747 | |
| Ama11748 | REVERSE TRANSCRIPTASES |
| Ama11749 | TATA-BOX BINDING PROTEIN |
| Ama11750 | SPLICING FACTOR 3B SUBUNIT 5 |
| Ama11751 | REGULATOR OF CHROMOSOME CONDENSATION |
| Ama11752 | |
| Ama11753 | |
| Ama11754 | |
| Ama11755 | |
| Ama11756 | ANDROGEN-INDUCED PROTEIN 1-RELATED |
| Ama11757 | |
| Ama11758 | 14-3-3 PROTEIN |
| Ama11760 | MRNA TURNOVER PROTEIN 4 MRTO4 |
