The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama11483 | INTEGRASE CORE DOMAIN CONTAINING PROTEIN |
Ama11484 | |
Ama11485 | PROTEIN CBG23764 |
Ama11486 | PROTEIN CBG23764 |
Ama11487 | |
Ama11489 | RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED |
Ama11496 | MULTIPLE PDZ DOMAIN PROTEIN |
Ama11497 | CADHERIN DOMAIN-CONTAINING PROTEIN |
Ama11499 | IL16-RELATED |
Ama114_5db7b01a | GRAM DOMAIN-CONTAINING PROTEIN 4 |
Ama11501 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN |
Ama11502 | VOLTAGE-GATED POTASSIUM CHANNEL |
Ama11505 | VOLTAGE-GATED POTASSIUM CHANNEL |
Ama11506 | VOLTAGE-GATED POTASSIUM CHANNEL |
Ama11507 | VOLTAGE-GATED POTASSIUM CHANNEL |
Ama11510 | |
Ama11512 | DNAJ HOMOLOG SUBFAMILY C MEMBER 9 |
Ama11513 | WD40 REPEAT PROTEIN |
Ama11514 | JUN TRANSCRIPTION FACTOR-RELATED |
Ama11515 | METHYLTRANSFERASE LIKE 7B |
Ama11516 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |
Ama11517 | T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN |
Ama11518 | EH DOMAIN |
Ama11519 | N-ACETYLGLUCOSAMINE-6-SULFATASE FAMILY MEMBER |
Ama11520 | |
Ama11521 | |
Ama11523 | GLIAL CELLS MISSING RELATED/GLIDE |
Ama11524 | TARTRATE-RESISTANT ACID PHOSPHATASE TYPE 5 |
Ama11526 | XLR/SCP3/FAM9 |
Ama11527 | TARTRATE-RESISTANT ACID PHOSPHATASE TYPE 5 |
Ama11528 | |
Ama11529 | PUTATIVE-RELATED |
Ama11533 | EH DOMAIN |
Ama11535 | DDB1- AND CUL4-ASSOCIATED FACTOR 12-RELATED |
Ama11536 | EIF4G DOMAIN PROTEIN |
Ama11538 | ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE |
Ama11541 | SGNH_HYDRO DOMAIN-CONTAINING PROTEIN |
Ama11542 | ANION EXCHANGE PROTEIN |
Ama11544 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Ama11546 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
Ama11547 | |
Ama11548 | HMG DOMAIN-CONTAINING PROTEIN 4 |
Ama11549 | |
Ama11550 | |
Ama11551 | RAB6A-GEF COMPLEX PARTNER PROTEIN 1 |
Ama11552 | RAB6A-GEF COMPLEX PARTNER PROTEIN 1 |
Ama11553 | T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN |
Ama11554 | SORTING NEXIN-4 |
Ama11556 | HIGH-AFFINITY CHOLINE TRANSPORTER 1 |
Ama11557 | HIGH-AFFINITY CHOLINE TRANSPORTER 1 |