The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
| Gene ID | Description |
|---|---|
| Ama11194 | INHIBITOR OF APOPTOSIS |
| Ama11195 | |
| Ama11196 | |
| Ama11197 | |
| Ama11198 | PATCHED-RELATED |
| Ama11201 | |
| Ama11205 | |
| Ama11206 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Ama11207 | SGNH_HYDRO DOMAIN-CONTAINING PROTEIN |
| Ama11208 | |
| Ama11209 | THAP DOMAIN PROTEIN |
| Ama11210 | |
| Ama11213 | |
| Ama11215 | |
| Ama11216 | |
| Ama11221 | |
| Ama11222 | |
| Ama11224 | |
| Ama11225 | |
| Ama11226 | ENDONUCLEASE-RELATED |
| Ama11227 | |
| Ama11228 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
| Ama11229 | |
| Ama11233 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Ama11234 | |
| Ama11236 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
| Ama11237 | LYSINE-SPECIFIC DEMETHYLASE |
| Ama11238 | TRANSPOSABLE ELEMENT-RELATED |
| Ama11239 | BACULOVIRAL IAP REPEAT-CONTAINING PROTEIN 1 |
| Ama11240 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Ama11242 | |
| Ama11243 | |
| Ama11244 | CONTACTIN 5 |
| Ama11245 | |
| Ama11246 | |
| Ama11247 | |
| Ama11249 | NEPHRIN |
| Ama11250 | - |
| Ama11254 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Ama11255 | |
| Ama11257 | TYROSINE-PROTEIN KINASE |
| Ama11263 | FERM AND PDZ DOMAIN-CONTAINING PROTEIN FAMILY MEMBER |
| Ama11264 | |
| Ama11265 | |
| Ama11267 | IGGFC_BINDING DOMAIN-CONTAINING PROTEIN |
| Ama11269 | |
| Ama11270 | HYDROXYSTEROID DEHYDROGENASE-LIKE PROTEIN 2 |
| Ama11271 | TUBULIN POLYGLUTAMYLASE |
| Ama11275 | |
| Ama11276 | MRNA EXPORT FACTOR AND BUB3 |
