The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama10_5db84494 | RIM BINDING PROTEIN-RELATED |
Ama11000 | |
Ama11001 | MITOCHONDRIA-EATING PROTEIN-RELATED |
Ama11003 | V-TYPE ATP SYNTHASE SUBUNIT D |
Ama11004 | ASPARTATEAMMONIA/ARGININOSUCCINATE/ADENYLOSUCCINATE LYASE |
Ama11005 | TRANSMEMBRANE PROTEIN 260 |
Ama11006 | |
Ama11008 | ALPHA-GLUCOSIDASE |
Ama11015 | XAP-5 PROTEIN-RELATED |
Ama11016 | |
Ama11017 | |
Ama11018 | |
Ama11019 | BLR2807 PROTEIN |
Ama11021 | WD REPEAT-CONTAINING PROTEIN 27 |
Ama11022 | WD REPEAT-CONTAINING PROTEIN 27 |
Ama11024 | |
Ama11028 | MYOSIN LIGHT CHAIN 1, 3 |
Ama11029 | MYOSIN LIGHT CHAIN 1, 3 |
Ama11031 | NETRIN RECEPTOR UNC5 |
Ama11032 | DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2 |
Ama11036 | FIBRONECTIN TYPE-III DOMAIN-CONTAINING PROTEIN-RELATED |
Ama11042 | B2 BRADYKININ RECEPTOR/ANGIOTENSIN II RECEPTOR |
Ama11044 | B2 BRADYKININ RECEPTOR/ANGIOTENSIN II RECEPTOR |
Ama11045 | DYNEIN HEAVY CHAIN |
Ama11046 | DYNEIN HEAVY CHAIN |
Ama11047 | MALE FERTILITY FACTOR KL5 |
Ama11048 | MALE FERTILITY FACTOR KL5 |
Ama11049 | UNCHARACTERIZED |
Ama11050 | |
Ama11053 | HYPOXIA-INDUCIBLE FACTOR 1 ALPHA |
Ama11054 | |
Ama11055 | UNCHARACTERIZED |
Ama11057 | PROSTAGLANDIN REDUCTASE |
Ama11058 | |
Ama11059 | RIBOSOME BINDING PROTEIN-1 |
Ama11062 | |
Ama11063 | BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN PROTEIN 1A |
Ama11064 | PIKACHURIN-LIKE PROTEIN |
Ama11065 | KNIRPS-RELATED PROTEIN-RELATED |
Ama11068 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
Ama11071 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Ama11072 | CLASS II CROSSOVER JUNCTION ENDONUCLEASE MUS81 |
Ama11074 | EXS-RELATED PROTEIN |
Ama11079 | HOMEOBOX PROTEIN SIX |
Ama11080 | MALE-ENHANCED ANTIGEN-1 |
Ama11081 | |
Ama11082 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Ama11083 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Ama11084 | HOMEOBOX PROTEIN SIX |
Ama11085 |