The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama105_5db7b01a | E3 UBIQUITIN-PROTEIN LIGASE ATL42 |
Ama10600 | ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL |
Ama10601 | LD33804P |
Ama10602 | TRANSCRIPTION INITIATION FACTOR IIB-RELATED |
Ama10603 | BTB/POZ DOMAIN-CONTAINING |
Ama10605 | INTIMAL THICKNESS RECEPTOR-RELATED |
Ama10606 | TRANS-3-HYDROXY-L-PROLINE DEHYDRATASE |
Ama10607 | PUTATIVE PHOSPHOTRANSFERASE |
Ama10608 | PROTEIN CLT2, CHLOROPLASTIC |
Ama10612 | ACTIN |
Ama10613 | ACTIN |
Ama10614 | ALPHA-MANNOSIDASE |
Ama10618 | |
Ama10619 | UBIQUITIN CONJUGATING ENZYME 7 INTERACTING PROTEIN-RELATED |
Ama10620 | KELCH PROTEIN |
Ama10621 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
Ama10623 | RE60986P |
Ama10624 | |
Ama10625 | |
Ama10626 | |
Ama10627 | POTE ANKYRIN DOMAIN |
Ama10629 | RECA/RAD51/RADA DNA STRAND-PAIRING FAMILY MEMBER |
Ama10630 | KNIRPS-RELATED PROTEIN-RELATED |
Ama10631 | |
Ama10633 | |
Ama10634 | |
Ama10635 | |
Ama10636 | POLYCYSTIC KIDNEY AND HEPATIC DISEASE 1 (AUTOSOMAL RECESSIVE)-LIKE 1 |
Ama10637 | SERYL-TRNA SYNTHETASE |
Ama10638 | HOMEOBOX PROTEIN |
Ama10639 | AG-1 BLOOD STAGE MEMBRANE PROTEIN HOMOLOGUE |
Ama10640 | |
Ama10641 | TRANSPOSON |
Ama10642 | ZINC FINGER PROTEIN |
Ama10643 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |
Ama10644 | GLYCOPROTEIN HORMONE BETA CHAIN |
Ama10647 | |
Ama10649 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED |
Ama10650 | CELL DEATH REGULATOR AVEN |
Ama10651 | O-ACYLTRANSFERASE |
Ama10652 | UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE |
Ama10653 | UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE |
Ama10654 | |
Ama10655 | |
Ama10656 | UNCHARACTERIZED |
Ama10657 | |
Ama10658 | TWO PORE CHANNEL 3 |
Ama10659 | TWO PORE CHANNEL 3 |
Ama10660 | ALPHA-MANNOSIDASE |
Ama10661 | - |