The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama10183 | BTB POZ DOMAIN CONTAINING 7 |
Ama10184 | GUANYLATE BINDING PROTEIN |
Ama10185 | WD REPEAT PROTEIN 26-RELATED |
Ama10187 | CORNICHON-RELATED |
Ama10188 | TETRATRICOPEPTIDE REPEAT PROTEIN 8 |
Ama10189 | FERMITIN 2-RELATED |
Ama10193 | |
Ama10194 | 2-OXOGLUTARATE DEHYDROGENASE |
Ama10195 | PROTEIN CBG16428 |
Ama10197 | MAP/MICROTUBULE AFFINITY-REGULATING KINASE |
Ama10199 | SERINE/THREONINE-PROTEIN KINASE PLK |
Ama10200 | EXPORTIN 1/5 |
Ama10201 | 26S PROTEASOME REGULATORY SUBUNIT |
Ama10202 | CLASS II AMINOTRANSFERASE/8-AMINO-7-OXONONANOATE SYNTHASE |
Ama10204 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
Ama10205 | |
Ama10206 | |
Ama10207 | |
Ama10208 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
Ama10209 | UNCHARACTERIZED |
Ama10210 | |
Ama10211 | CELL DEATH ACTIVATOR CIDE |
Ama10212 | DNA REPLICATION-RELATED ELEMENT FACTOR, ISOFORM A |
Ama10213 | |
Ama10214 | PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4 |
Ama10215 | |
Ama10217 | |
Ama10218 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Ama10219 | SIMILAR TO RIKEN CDNA E130308A19 |
Ama10220 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Ama10223 | LD35087P |
Ama10225 | - |
Ama10227 | |
Ama10228 | MUSCLE-SPECIFIC PROTEIN 300 KDA, ISOFORM G |
Ama10233 | GLYCOSYLTRANSFERASE 14 FAMILY MEMBER |
Ama10236 | |
Ama10237 | SPECTRIN REPEAT CONTAINING NUCLEAR ENVELOPE PROTEIN 2 |
Ama10238 | DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 |
Ama10239 | |
Ama10240 | ATP-DEPENDENT RNA HELICASE RHLE-RELATED |
Ama10241 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
Ama10242 | THAP DOMAIN PROTEIN |
Ama10243 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN |
Ama10245 | EXPRESSED PROTEIN |
Ama10248 | |
Ama10249 | |
Ama10252 | DOUBLE ZINC RIBBON AND ANKYRIN REPEAT-CONTAINING PROTEIN 1 |
Ama10253 | |
Ama10254 | 40S RIBOSOMAL PROTEIN S30/UBIQUITIN-LIKE PROTEIN FUBI |
Ama10255 |