The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama10110 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Ama10111 | |
Ama10112 | LEUCINE RICH REPEAT FAMILY PROTEIN |
Ama10113 | MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED |
Ama10116 | PHOSPHODIESTERASE HL |
Ama10117 | SUN-COR STEROID HORMONE RECEPTOR CO-REPRESSOR |
Ama10118 | ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN |
Ama10119 | CYCLIN |
Ama10121 | PUTATIVE-RELATED |
Ama10122 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |
Ama10123 | ORGANIC ANION TRANSPORTER |
Ama10124 | |
Ama10125 | |
Ama10127 | - |
Ama10136 | - |
Ama10137 | IONOTROPIC GLUTAMATE RECEPTOR |
Ama10138 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Ama10139 | UBIQUITIN LIGASE E3 ALPHA-RELATED |
Ama10141 | |
Ama10143 | TRANSPOSABLE ELEMENT-RELATED |
Ama10144 | GLYCOGEN PHOSPHORYLASE |
Ama10146 | MENIN |
Ama10147 | CLEFT LIP AND PALATE ASSOCIATED TRANSMEMBRANE PROTEIN-RELATED |
Ama10148 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN |
Ama10149 | |
Ama10150 | APPLE DOMAIN-CONTAINING PROTEIN |
Ama10151 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Ama10152 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
Ama10153 | |
Ama10154 | |
Ama10155 | STAR-RELATED LIPID TRANSFER PROTEIN 9 |
Ama10159 | LYSOPHOSPHOLIPASE-RELATED |
Ama10160 | TUBULIN POLYGLUTAMYLASE |
Ama10163 | |
Ama10164 | CALCIUM BINDING PROTEIN |
Ama10165 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |
Ama10166 | HELIX LOOP HELIX PROTEIN 21-RELATED |
Ama10167 | CASPASE REGULATOR, RING FINGER DOMAIN-CONTAINING |
Ama10168 | B2 BRADYKININ RECEPTOR/ANGIOTENSIN II RECEPTOR |
Ama10169 | |
Ama10172 | |
Ama10173 | ADP RIBOSYLATION FACTOR-RELATED |
Ama10174 | N-ACETYLTRANSFERASE-RELATED |
Ama10175 | |
Ama10176 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
Ama10177 | SODIUM/CALCIUM EXCHANGER |
Ama10179 | SERINE/THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B |
Ama10180 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
Ama10181 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
Ama10182 | OLIGORIBONUCLEASE, MITOCHONDRIAL |