The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama09681 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Ama09682 | HOMEOBOX PROTEIN ARISTALESS |
Ama09683 | |
Ama09684 | |
Ama09685 | MYOSUPPRESSIN RECEPTOR 1, ISOFORM B-RELATED |
Ama09687 | CHAPERONIN |
Ama09688 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
Ama09689 | LETHAL 2 DENTICLELESS PROTEIN RETINOIC ACID-REGULATED NUCLEAR MATRIX-ASSOCIATED PROTEIN |
Ama09690 | COMM DOMAIN-CONTAINING PROTEIN 1 |
Ama09698 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
Ama09699 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Ama09700 | B2 BRADYKININ RECEPTOR/ANGIOTENSIN II RECEPTOR |
Ama09703 | |
Ama09711 | METASTASIS-ASSOCIATED PROTEIN AND MESODERM INDUCTION EARLY RESPONSE PROTEIN |
Ama09715 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Ama09717 | ACYL-COENZYME A THIOESTERASE-RELATED |
Ama09718 | |
Ama09720 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
Ama09721 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Ama09722 | PROTEIN DISPATCHED-RELATED |
Ama09728 | N-ACETYLATED-ALPHA-LINKED ACIDIC DIPEPTIDASE |
Ama09729 | N-ACETYLATED-ALPHA-LINKED ACIDIC DIPEPTIDASE |
Ama09730 | |
Ama09731 | |
Ama09732 | |
Ama09734 | DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2 |
Ama09735 | SERINE/THREONINE-PROTEIN KINASE PLK |
Ama09736 | MAP/MICROTUBULE AFFINITY-REGULATING KINASE |
Ama09737 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |
Ama09739 | |
Ama09740 | MAP/MICROTUBULE AFFINITY-REGULATING KINASE |
Ama09742 | ORF PROTEIN-RELATED |
Ama09743 | |
Ama09744 | |
Ama09745 | SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN |
Ama09746 | |
Ama09748 | TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN |
Ama09749 | |
Ama09750 | |
Ama09752 | |
Ama09753 | |
Ama09755 | GH04784P |
Ama09756 | ZINC FINGER AND BTB DOMAIN-CONTAINING |
Ama09757 | RHO FAMILY GTPASE |
Ama09758 | |
Ama09760 | HSC70-INTERACTING PROTEIN |
Ama09761 | |
Ama09762 | DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL |
Ama09763 | |
Ama09764 | C2H2 ZINC FINGER CGI-62-RELATED |