The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
| Gene ID | Description |
|---|---|
| Ama09597 | |
| Ama09598 | UNCHARACTERIZED |
| Ama09600 | |
| Ama09603 | PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4 |
| Ama09604 | PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4 |
| Ama09606 | KUNITZ-TYPE PROTEASE INHIBITOR-RELATED |
| Ama09608 | KUNITZ-TYPE PROTEASE INHIBITOR-RELATED |
| Ama09609 | KUNITZ-TYPE PROTEASE INHIBITOR-RELATED |
| Ama09610 | |
| Ama09611 | KUNITZ-TYPE PROTEASE INHIBITOR-RELATED |
| Ama09613 | KUNITZ-TYPE PROTEASE INHIBITOR-RELATED |
| Ama09614 | KUNITZ-TYPE PROTEASE INHIBITOR-RELATED |
| Ama09616 | |
| Ama09617 | |
| Ama09618 | |
| Ama09619 | INHIBITOR OF APOPTOSIS |
| Ama09620 | |
| Ama09621 | |
| Ama09622 | |
| Ama09623 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Ama09624 | |
| Ama09625 | |
| Ama09626 | |
| Ama09628 | |
| Ama09629 | NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER |
| Ama09630 | |
| Ama09631 | |
| Ama09633 | YLP MOTIF CONTAINING PROTEIN NUCLEAR PROTEIN ZAP |
| Ama09634 | PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4 |
| Ama09635 | |
| Ama09636 | PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4 |
| Ama09643 | AP COMPLEX SUBUNIT MU |
| Ama09644 | URIDINE DIPHOSPHATE GLUCOSE PYROPHOSPHATASE |
| Ama09645 | |
| Ama09646 | 30S RIBOSOMAL PROTEIN S18 |
| Ama09650 | OS10G0105400 PROTEIN |
| Ama09651 | UPF0669 PROTEIN C6ORF120 |
| Ama09652 | |
| Ama09653 | EXS-RELATED PROTEIN |
| Ama09655 | TESTICULAR SOLUBLE ADENYLYL CYCLASE |
| Ama09656 | H2.0-LIKE HOMEOBOX PROTEIN |
| Ama09659 | |
| Ama09661 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| Ama09662 | SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER |
| Ama09664 | |
| Ama09665 | |
| Ama09675 | SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER |
| Ama09676 | ACTIN |
| Ama09679 | |
| Ama09680 |
