The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama09898 | KINESIN-RELATED |
Ama09899 | ACIDIC FIBROBLAST GROWTH FACTOR INTRACELLULAR BINDING PROTEIN |
Ama09900 | T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN |
Ama09902 | OS02G0202900 PROTEIN |
Ama09904 | DUAL SPECIFICITY PROTEIN PHOSPHATASE |
Ama09906 | UNCHARACTERIZED |
Ama09907 | TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 6B |
Ama09908 | LONG-CHAIN-FATTY-ACID--COA LIGASE |
Ama09909 | |
Ama09910 | |
Ama09912 | |
Ama09913 | |
Ama09914 | FLAVIN MONOAMINE OXIDASE |
Ama09915 | CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 2 |
Ama09916 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
Ama09917 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
Ama09918 | UNCHARACTERIZED |
Ama09919 | WD REPEAT AND HMG-BOX DNA BINDING PROTEIN |
Ama09920 | ACYLPHOSPHATASE |
Ama09921 | CYTOCHROME P450 508A4-RELATED |
Ama09924 | METAL-SULFUR CLUSTER BIOSYNTHESIS PROTEINS YUAD-RELATED |
Ama09925 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
Ama09926 | |
Ama09927 | |
Ama09928 | |
Ama09929 | |
Ama09930 | FOS TRANSCRIPTION FACTOR-RELATED |
Ama09931 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Ama09933 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
Ama09934 | SERINE/THREONINE-PROTEIN KINASE PIM |
Ama09935 | CYTOCHROME P450 508A4-RELATED |
Ama09936 | ADP RIBOSYLATION FACTOR-RELATED |
Ama09937 | THYROTROPH EMBRYONIC FACTOR RELATED |
Ama09938 | |
Ama09939 | |
Ama09940 | ATP-DEPENDENT DNA HELICASE |
Ama09941 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN |
Ama09942 | |
Ama09943 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Ama09945 | KINETOCHORE SCAFFOLD 1 |
Ama09946 | |
Ama09947 | ALDOSE-1-EPIMERASE |
Ama09948 | ALDOSE-1-EPIMERASE |
Ama09949 | |
Ama09950 | |
Ama09951 | THREE PRIME REPAIR EXONUCLEASE 1, 2 |
Ama09952 | |
Ama09953 | |
Ama09954 | ATP-BINDING CASSETTE SUB-FAMILY C |
Ama09955 |