The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
| Gene ID | Description |
|---|---|
| Ama10256 | TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 1 |
| Ama10257 | GUANINE NUCLEOTIDE EXCHANGE FACTOR |
| Ama10264 | GLYCOPROTEIN HORMONE RECEPTOR |
| Ama10266 | |
| Ama10267 | |
| Ama10268 | MATING RESPONSE PROTEIN POI2 |
| Ama10269 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| Ama10270 | |
| Ama10273 | HEAT SHOCK PROTEIN 90 HSP90 CO-CHAPERONE AHA-1 |
| Ama10274 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
| Ama10276 | LEUCINE-RICH REPEAT AND IQ DOMAIN-CONTAINING PROTEIN 1-RELATED |
| Ama10277 | BCS1 AAA-TYPE ATPASE |
| Ama10279 | CASEIN KINASE-RELATED |
| Ama10280 | LEUCINE-RICH REPEAT, ISOFORM F-RELATED |
| Ama10281 | PROTEIN PHOSPHATASE 4 REGULATORY SUBUNIT 4 PPP4R4 |
| Ama10283 | POTASSIUM CHANNEL, SUBFAMILY K |
| Ama10284 | COLON CANCER-ASSOCIATED PROTEIN MIC1 |
| Ama10285 | COLON CANCER-ASSOCIATED PROTEIN MIC1 |
| Ama10286 | MALATE DEHYDROGENASE |
| Ama10287 | |
| Ama10289 | |
| Ama10292 | |
| Ama10293 | |
| Ama10294 | HELICASE RELATED |
| Ama10295 | JNK1/MAPK8-ASSOCIATED MEMBRANE PROTEIN |
| Ama10296 | UNCHARACTERIZED |
| Ama10298 | UNCHARACTERIZED |
| Ama10299 | |
| Ama102_5db7b01a | THIOREDOXIN-LIKE PROTEIN 1 |
| Ama10300 | 39S RIBOSOMAL PROTEIN L14, MITOCHONDRIAL |
| Ama10301 | FIBRONECTIN TYPE-III DOMAIN-CONTAINING PROTEIN-RELATED |
| Ama10302 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Ama10304 | RAB FAMILY |
| Ama10305 | BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE |
| Ama10306 | DNA POLYMERASE EPSILON SUBUNIT B |
| Ama10313 | HOMEOBOX PROTEIN |
| Ama10314 | UBIQUITIN-ACTIVATING ENZYME E1 |
| Ama10316 | |
| Ama10317 | |
| Ama10320 | HOMEOBOX PROTEIN PROSPERO/PROX-1/CEH-26 |
| Ama10325 | DNA REPAIR/TRANSCRIPTION PROTEIN MET18/MMS19 |
| Ama10326 | UBIQUITIN DOMAIN CONTAINING 1 PROTEIN-RELATED |
| Ama10327 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 11 |
| Ama10328 | PEPTIDYLPROLYL ISOMERASE |
| Ama10329 | |
| Ama10330 | TSEC-2-RELATED |
| Ama10331 | ATP SYNTHASE GAMMA-RELATED |
| Ama10333 | CYCLIN-DEPENDENT KINASE 2-INTERACTING PROTEIN |
| Ama10334 | SUGAR KINASE |
| Ama10336 | GTP CYCLOHYDROLASE I |
