About Archivesica marissinica

The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Archivesica marissinicaMolluscaDeep-Sea ClamHydrothermal vent1,361 Haima cold seep in the South China Sea2291877

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
ASM1484369v11.5GbChromosome2020JABXNX01Hong Kong Baptist UniversityPRJNA62989893.50%28,949

References
TitleJournalPubmed ID
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic ClamMolecular Biology and Evolution32956455

Gene Information

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Gene IDDescription
Ama11559TRNA (GUANINE-9-) METHYLTRANSFERASE
Ama11560REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Ama11561DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2
Ama11564TYROSINE-PROTEIN KINASE
Ama11565REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Ama11566
Ama11571(E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME
Ama11572
Ama11573VOLTAGE-GATED POTASSIUM CHANNEL
Ama11575VOLTAGE-GATED POTASSIUM CHANNEL
Ama11576
Ama11577UBIQUITIN-CONJUGATING ENZYME E2
Ama115783'(2'),5'-BISPHOSPHATE NUCLEOTIDASE 1
Ama11583MATRIX PROTEIN, PUTATIVE-RELATED
Ama11584GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE
Ama11585
Ama11586LEUCOKININ RECEPTOR-RELATED
Ama11588G-PROTEIN COUPLED RECEPTOR
Ama11589TRANSCRIPTION FACTOR CP2
Ama11590INHIBITOR OF APOPTOSIS
Ama11591
Ama11592TRANSLATIONAL ACTIVATOR GCN1-RELATED
Ama11593CYSTEINE PROTEASE FAMILY C1-RELATED
Ama1159650S RIBOSOMAL PROTEIN L15
Ama11597
Ama11599MRG-BINDING PROTEIN
Ama115_5db7b01aIMMUNOGLOBULIN
Ama11600TRANSPOSABLE ELEMENT-RELATED
Ama11601FI20236P1
Ama11604
Ama11606TGF-BETA FAMILY
Ama11607V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT
Ama11609CHLORIDE INTRACELLULAR CHANNEL, ISOFORM A
Ama11610GUANYLYL CYCLASE
Ama11611G-PROTEIN COUPLED RECEPTOR
Ama11612ZGC:195170
Ama1161352 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED
Ama1161452 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED
Ama11616SOX TRANSCRIPTION FACTOR
Ama11619NOTCH LIGAND FAMILY MEMBER
Ama11621
Ama11623
Ama11624PROTEASE M3 THIMET OLIGOPEPTIDASE-RELATED
Ama11625PROTEIN PATCHED
Ama11627PROTEIN PATCHED
Ama11628AAA-FAMILY ATPASE
Ama11629LEPTIN RECEPTOR-RELATED
Ama11630TENEURIN AND N-ACETYLGLUCOSAMINE-1-PHOSPHODIESTER ALPHA-N-ACETYLGLUCOSAMINIDASE
Ama11631EPHRIN TYPE-B RECEPTOR
Ama11632
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