The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama12628 | 1-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE-RELATED |
Ama12629 | |
Ama12630 | GLUTAREDOXIN |
Ama12631 | VITELLOGENIN-RELATED |
Ama12632 | AGAP008810-PA |
Ama12634 | TYROSINE-PROTEIN KINASE |
Ama12635 | PUTATIVE-RELATED |
Ama12636 | |
Ama12637 | LIPASE |
Ama12638 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Ama12639 | |
Ama12640 | |
Ama12641 | |
Ama12642 | L1 TRANSPOSABLE ELEMENT-RELATED |
Ama12643 | VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED |
Ama12644 | TRANSCRIPTION INITIATION FACTOR IIE, BETA SUBUNIT |
Ama12646 | |
Ama12648 | LIPID PHOSPHATE PHOSPHATASE |
Ama12649 | ANNEXIN |
Ama12651 | HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED |
Ama12652 | TRANSCRIPTION INITIATION FACTOR IIIC TFIIIC , POLYPEPTIDE 3-RELATED |
Ama12653 | TRANSCRIPTION INITIATION FACTOR IIIC TFIIIC , POLYPEPTIDE 3-RELATED |
Ama12654 | CELL CYCLE CHECKPOINT PROTEIN RAD17 |
Ama12655 | |
Ama12656 | ALPHA-GLUCOSIDASE |
Ama12657 | ALPHA-GLUCOSIDASE |
Ama12658 | ALPHA-GLUCOSIDASE |
Ama12660 | UNCHARACTERIZED |
Ama12661 | |
Ama12662 | AGAP005440-PA |
Ama12663 | BLADDER CANCER 10 KD PROTEIN HOMOLOG |
Ama12664 | HISTONE ACETYLTRANSFERASE-RELATED |
Ama12665 | HISTONE ACETYLTRANSFERASE-RELATED |
Ama12666 | PCNA-INTERACTING PARTNER |
Ama12667 | TRANSPOSON |
Ama12671 | PCNA-INTERACTING PARTNER |
Ama12672 | PCNA-INTERACTING PARTNER |
Ama12673 | G PROTEIN-COUPLED RECEPTOR |
Ama12674 | |
Ama12675 | TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT GAMMA |
Ama12677 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
Ama12678 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Ama12679 | SGNH_HYDRO DOMAIN-CONTAINING PROTEIN |
Ama12680 | DUF814-RELATED |
Ama12681 | STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 15 |
Ama12682 | CARBOXYLESTERASE |
Ama12683 | SPHINGOSINE KINASE |
Ama12684 | SPHINGOSINE KINASE |
Ama12685 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Ama12687 | CYTOCHROME B561/FERRIC REDUCTASE TRANSMEMBRANE |