The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama12810 | TYROSINE-PROTEIN KINASE |
Ama12813 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
Ama12816 | CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44) |
Ama12818 | SUPEROXIDE DISMUTASE CU-ZN -RELATED |
Ama12819 | TRANSCRIPTION INITIATION FACTOR TFIID |
Ama12822 | ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN 1 |
Ama12823 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
Ama12826 | SOLUTE CARRIER FAMILY 17 |
Ama12827 | IMPORTIN BETA |
Ama12829 | RECQ-MEDIATED GENOME INSTABILITY PROTEIN 2 RMI2 |
Ama12832 | OLIGORIBONUCLEASE, MITOCHONDRIAL |
Ama12833 | OLIGORIBONUCLEASE, MITOCHONDRIAL |
Ama12834 | |
Ama12835 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED |
Ama12836 | SPRY DOMAIN CONTAINING SOCS BOX PROTEIN |
Ama12837 | NITRILASE-RELATED |
Ama12839 | |
Ama12841 | |
Ama12842 | PROGRAMMED CELL DEATH 4 |
Ama12843 | |
Ama12846 | |
Ama12847 | CABIT DOMAIN-CONTAINING PROTEIN |
Ama12848 | |
Ama12849 | |
Ama12850 | FORKHEAD BOX PROTEIN |
Ama12851 | INTRAFLAGELLAR TRANSPORT PROTEIN 74 HOMOLOG |
Ama12855 | SOSS COMPLEX SUBUNIT C |
Ama12856 | |
Ama12857 | EYES ABSENT |
Ama12861 | FER-1-LIKE |
Ama12862 | FER-1-LIKE |
Ama12863 | FER-1-LIKE |
Ama12864 | FER-1-LIKE |
Ama12865 | FER-1-LIKE |
Ama12866 | FER-1-LIKE |
Ama12867 | |
Ama12868 | |
Ama12869 | |
Ama12870 | KELCH PROTEIN |
Ama12871 | POLY A -SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1 |
Ama12873 | DYNACTIN 1-RELATED MICROTUBULE-BINDING |
Ama12874 | T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN |
Ama12875 | |
Ama12876 | |
Ama12877 | DIHYDROLIPOAMIDE ACETYLTRANSFERASE COMPONENT OF PYRUVATE DEHYDROGENASE COMPLEX |
Ama12878 | PROTEIN CBG16200 |
Ama12879 | |
Ama12880 | LEUCINE REPEAT ADAPTER PROTEIN 25 |
Ama12882 | |
Ama12883 | TYROSINASE FAMILY MEMBER |