The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
| Gene ID | Description |
|---|---|
| Ama13008 | UNCHARACTERIZED |
| Ama13011 | ANTI-SILENCING PROTEIN 1 |
| Ama13012 | |
| Ama13013 | NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED |
| Ama13014 | WD REPEAT-CONTAINING PROTEIN 36 |
| Ama13015 | CHROMOSOME 6 C6ORF201 HOMOLOG |
| Ama13016 | COILED-COIL DOMAIN-CONTAINING PROTEIN 178 |
| Ama13018 | |
| Ama13019 | |
| Ama13022 | GRB2-ASSOCIATED AND REGULATOR OF MAPK PROTEIN FAMILY MEMBER |
| Ama13025 | KINESIN-RELATED PROTEIN 6 |
| Ama13027 | ADDITIONAL SEX COMBS LIKE PROTEIN ASXL |
| Ama13028 | PEROXISOMAL MEMBRANE PROTEIN PEX13 |
| Ama13029 | |
| Ama13030 | SULFATASE MODIFYING FACTOR 1, 2 |
| Ama13031 | CGI-140 |
| Ama13032 | |
| Ama13033 | SLR1441 PROTEIN |
| Ama13034 | CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN |
| Ama13035 | TYROSINE-PROTEIN KINASE RECEPTOR |
| Ama13036 | G-PROTEIN COUPLED RECEPTOR |
| Ama13037 | |
| Ama13038 | |
| Ama13039 | |
| Ama13040 | TRANSMEMBRANE PROTEIN |
| Ama13041 | |
| Ama13042 | |
| Ama13043 | CEREBELLIN-RELATED |
| Ama13044 | BIFUNCTIONAL POLYMYXIN RESISTANCE PROTEIN ARNA |
| Ama13045 | |
| Ama13046 | 2-5 OLIGOADENYLATE SYNTHETASE |
| Ama13047 | RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN |
| Ama13049 | MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED |
| Ama13050 | MYB-LIKE PROTEIN V |
| Ama13051 | |
| Ama13052 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
| Ama13053 | |
| Ama13054 | |
| Ama13056 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| Ama13057 | APPLE DOMAIN-CONTAINING PROTEIN |
| Ama13058 | ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER |
| Ama13059 | NUCLEAR AUTOANTIGENIC SPERM PROTEIN NASP -RELATED |
| Ama13060 | |
| Ama13061 | SMC5-SMC6 COMPLEX LOCALIZATION FACTOR PROTEIN 1 |
| Ama13063 | |
| Ama13064 | CALCYPHOSIN |
| Ama13066 | CALCYPHOSIN |
| Ama13068 | |
| Ama13069 | CENTROMERE PROTEIN C |
| Ama13070 | GOLGIN- RELATED |
