About Archivesica marissinica

The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Archivesica marissinicaMolluscaDeep-Sea ClamHydrothermal vent1,361 Haima cold seep in the South China Sea2291877

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
ASM1484369v11.5GbChromosome2020JABXNX01Hong Kong Baptist UniversityPRJNA62989893.50%28,949

References
TitleJournalPubmed ID
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic ClamMolecular Biology and Evolution32956455

Gene Information

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Gene IDDescription
Ama12941NEUROLIGIN
Ama12942ANKYRIN REPEAT PROTEIN
Ama12943MSF1/PX19 RELATED
Ama12944
Ama12945THIOREDOXIN PEROXIDASE
Ama12946
Ama12948
Ama12949REVERSE TRANSCRIPTASES
Ama12950
Ama12952N-ACETYLTRANSFERASE ECO
Ama12954COILED-COIL DOMAIN-CONTAINING PROTEIN 17
Ama12955COILED-COIL DOMAIN-CONTAINING PROTEIN 17
Ama12956TRANSMEMBRANE PROTEIN 59-LIKE PROTEIN
Ama1295760S RIBOSOMAL PROTEIN L37
Ama12958F-BOX ONLY PROTEIN 4
Ama12959TFIIF-ALPHA
Ama12960INNEXIN
Ama12962
Ama12963
Ama12964MYOSIN REGULATORY LIGHT CHAIN 2
Ama12965MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 23
Ama12966CELL DIVISION CYCLE 16,23,27
Ama12968SERINE/THREONINE-PROTEIN KINASE 17
Ama12969INHIBITOR OF APOPTOSIS
Ama12970
Ama12971RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
Ama12972UDP-GLUCOSE 4-EPIMERASE
Ama12973CXC DOMAIN-CONTAINING PROTEIN-RELATED
Ama12974CYTOCHROME P450 FAMILY 3
Ama12976PROTEIN C20ORF43 HOMOLOG
Ama12977UNCHARACTERIZED
Ama12978
Ama12982ZINC FINGER FYVE DOMAIN-CONTAINING PROTEIN
Ama129833'-5' EXONUCLEASE ERI1-RELATED
Ama12984THIOREDOXIN-LIKE PROTEIN 1
Ama12986UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 7.8 KDA PROTEIN
Ama12988
Ama12990METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRANSFERASE RELATED
Ama12991CYSTEINE AND GLYCINE-RICH PROTEIN 2 BINDING PROTEIN
Ama12992METALLOENDOPEPTIDASE OMA1
Ama12993MAP/MICROTUBULE AFFINITY-REGULATING KINASE
Ama12994DNA EXCISION REPAIR PROTEIN ERCC-8
Ama12995RNA 3' TERMINAL PHOSPHATE CYCLASE
Ama12999
Ama129_5db7b01aMYOSIN LIGHT CHAIN 1, 3
Ama12_5db7b01a-
Ama13001FIVE-SPAN TRANSMEMBRANE PROTEIN M83
Ama13002LYSOPHOSPHOLIPASE-RELATED
Ama13006HISTONE H1
Ama13007
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