The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama12688 | NUCLEAR HORMONE RECEPTOR |
Ama12689 | BIOGENESIS OF LYSOSOME-RELATED ORGANELLES COMPLEX 1 SUBUNIT 3 |
Ama12690 | NUCLEAR INHIBITOR OF PROTEIN PHOSPHATASE-1 |
Ama12691 | RAN BINDING PROTEIN 9-RELATED |
Ama12692 | |
Ama12693 | CELL DEATH ACTIVATOR CIDE |
Ama12694 | TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 3 |
Ama12695 | DNA HELICASE-RELATED |
Ama12696 | |
Ama12697 | TRANSPOSON |
Ama12698 | |
Ama12699 | |
Ama126_5db7b01a | - |
Ama12700 | |
Ama12701 | G-PROTEIN COUPLED RECEPTOR FAMILY 1 MEMBER |
Ama12702 | |
Ama12703 | PLASMINOGEN-RELATED |
Ama12704 | |
Ama12705 | |
Ama12706 | PLASMINOGEN-RELATED |
Ama12707 | |
Ama12708 | BECLIN 1-ASSOCIATED AUTOPHAGY-RELATED KEY REGULATOR |
Ama12709 | TETRATRICOPEPTIDE-LIKE HELICAL |
Ama12710 | T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN |
Ama12711 | |
Ama12712 | PEPTIDASE |
Ama12714 | TRANSPOSABLE ELEMENT-RELATED |
Ama12715 | |
Ama12716 | |
Ama12717 | |
Ama12718 | |
Ama12720 | UNCHARACTERIZED |
Ama12721 | LIPID PHOSPHATE PHOSPHATASE |
Ama12722 | CALCITONIN GENE-RELATED PEPTIDE-RECEPTOR COMPONENT PROTEIN |
Ama12723 | XK-RELATED PROTEIN |
Ama12726 | SOX TRANSCRIPTION FACTOR |
Ama12730 | |
Ama12731 | |
Ama12732 | NGD5/OSM-6/IFT52 |
Ama12733 | PBS LYASE HEAT-LIKE PROTEIN |
Ama12734 | |
Ama12736 | |
Ama12738 | |
Ama12739 | LD33804P |
Ama12740 | OXIDOREDUCTASE-RELATED |
Ama12741 | HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED |
Ama12742 | SERINE/ARGININE-RICH SPLICING FACTOR |
Ama12743 | CENTROMERE PROTEIN E |
Ama12744 | DNAJ HOMOLOG SUBFAMILY C MEMBER 21 |
Ama12745 | GLUCOSYLCERAMIDASE |