The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama13511 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Ama13512 | ZINC FINGER RAN-BINDING DOMAIN-CONTAINING PROTEIN 2 ZRANB2-RELATED |
Ama13513 | BONUS, ISOFORM C-RELATED |
Ama13514 | |
Ama13515 | |
Ama13516 | SODIUM/DICARBOXYLATE SYMPORTER-RELATED |
Ama13517 | DEATH DOMAIN-CONTAINING PROTEIN |
Ama13519 | DEATH DOMAIN-CONTAINING PROTEIN |
Ama13521 | DEATH DOMAIN-CONTAINING PROTEIN |
Ama13525 | |
Ama13536 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED |
Ama13537 | SREK1IP1 FAMILY MEMBER |
Ama13538 | |
Ama13539 | VACUOLAR PROTEIN SORTING 28, ISOFORM 2 VPS28 |
Ama13544 | UNCHARACTERIZED |
Ama13545 | ARMADILLO-LIKE HELICAL DOMAIN CONTAINING PROTEIN 1 |
Ama13546 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Ama13549 | |
Ama13552 | DYNEIN INTERMEDIATE CHAIN |
Ama13576 | RETICULOCALBIN |
Ama13577 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Ama13578 | |
Ama13585 | |
Ama13587 | CHIMERIN FAMILY MEMBER |
Ama13588 | PHOSPHATIDYLINOSITOL 3-KINASE REGULATORY SUBUNIT |
Ama13590 | |
Ama13594 | NUCLEAR AUTOANTIGENIC SPERM PROTEIN NASP -RELATED |
Ama13595 | UNCHARACTERIZED |
Ama13597 | PROTEIN-TYROSINE SULFOTRANSFERASE 2 |
Ama13598 | |
Ama13599 | PROTEIN-TYROSINE SULFOTRANSFERASE 2 |
Ama135_5db7b01a | DNA REPLICATION-RELATED ELEMENT FACTOR, ISOFORM A |
Ama13600 | |
Ama13604 | |
Ama13605 | INHIBITOR OF APOPTOSIS |
Ama13606 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
Ama13610 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
Ama13611 | ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER |
Ama13612 | |
Ama13614 | ALKALINE PHOSPHATASE |
Ama13615 | |
Ama13616 | |
Ama13617 | |
Ama13627 | POU DOMAIN CLASS 2-ASSOCIATING FACTOR 1 |
Ama13631 | |
Ama13633 | RAS-RELATED PROTEIN RAB |
Ama13634 | MICROSOMAL GLUTATHIONE S-TRANSFERASE |
Ama13635 | MICROSOMAL GLUTATHIONE S-TRANSFERASE |
Ama13636 | NGFI-A BINDING PROTEIN |
Ama13637 | NGFI-A BINDING PROTEIN |