The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama09080 | G DOMAIN-CONTAINING PROTEIN |
Ama09081 | |
Ama09082 | PRE-MRNA PROCESSING PROTEIN PRP39-RELATED |
Ama09083 | PRE-MRNA PROCESSING PROTEIN PRP39-RELATED |
Ama09084 | TRANSMEMBRANE PROTEIN 179 |
Ama09085 | LEUCINE RICH REPEAT FAMILY PROTEIN |
Ama09086 | |
Ama09087 | E3 UBIQUITIN-PROTEIN LIGASE PELLINO-RELATED |
Ama09089 | MYOSIN HEAVY CHAIN - RELATED |
Ama09090 | |
Ama09091 | MYOSIN HEAVY CHAIN - RELATED |
Ama09092 | VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED |
Ama09093 | MULTIPLE COAGULATION FACTOR DEFICIENCY PROTEIN 2 NEURAL STEM CELL DERIVED NEURONAL SURVIVAL PROTEIN |
Ama09094 | |
Ama09095 | |
Ama09096 | CYCLIC NUCLEOTIDE-GATED CATION CHANNEL SUBUNIT A |
Ama09097 | POTASSIUM CHANNEL, SUBFAMILY K |
Ama09098 | |
Ama09102 | TRANSPOSABLE ELEMENT-RELATED |
Ama09103 | G DOMAIN-CONTAINING PROTEIN |
Ama09104 | |
Ama09105 | G DOMAIN-CONTAINING PROTEIN |
Ama09109 | G DOMAIN-CONTAINING PROTEIN |
Ama09110 | KRAB DOMAIN C2H2 ZINC FINGER |
Ama09111 | |
Ama09112 | G DOMAIN-CONTAINING PROTEIN |
Ama09113 | BONUS, ISOFORM C-RELATED |
Ama09114 | |
Ama09116 | REVERSE TRANSCRIPTASES |
Ama09120 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
Ama09121 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Ama09122 | RAN GTPASE-ACTIVATING PROTEIN 1 |
Ama09123 | |
Ama09124 | TATA BOX-BINDING PROTEIN ASSOCIATED FACTOR RNA POLYMERASE I SUBUNIT A |
Ama09125 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
Ama09126 | PROLYL 4-HYDROXYLASE ALPHA SUBUNIT |
Ama09127 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |
Ama09128 | PHOSPHOFURIN ACIDIC CLUSTER SORTING PROTEIN |
Ama09130 | - |
Ama09131 | |
Ama09132 | |
Ama09133 | TRANSMEMBRANE PROTEIN 251 |
Ama09134 | ZINC FINGER PROTEIN-LIKE 1 |
Ama09135 | B30.2/SPRY DOMAIN-CONTAINING PROTEIN |
Ama09136 | B30.2/SPRY DOMAIN-CONTAINING PROTEIN |
Ama09137 | B30.2/SPRY DOMAIN-CONTAINING PROTEIN |
Ama09138 | B30.2/SPRY DOMAIN-CONTAINING PROTEIN |
Ama09139 | B30.2/SPRY DOMAIN-CONTAINING PROTEIN |
Ama09140 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
Ama09141 | B30.2/SPRY DOMAIN-CONTAINING PROTEIN |