The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama08946 | |
Ama08947 | |
Ama08949 | XAP-5 PROTEIN-RELATED |
Ama08950 | XAP-5 PROTEIN-RELATED |
Ama08951 | PYRROLINE-5-CARBOXYLATE REDUCTASE |
Ama08952 | DELTA(14)-STEROL REDUCTASE |
Ama08953 | COFILIN-RELATED |
Ama08958 | PURPLE ACID PHOSPHATASE |
Ama08959 | SMALL INTEGRAL MEMBRANE PROTEIN 12 |
Ama08960 | PA-PL1 PHOSPHOLIPASE FAMILY |
Ama08963 | |
Ama08964 | SOLUTE CARRIER FAMILY 34 SODIUM PHOSPHATE , MEMBER 2-RELATED |
Ama08965 | 2-AMINOETHYLPHOSPHONATE--PYRUVATE TRANSAMINASE |
Ama08967 | |
Ama08968 | TRICALBIN-1-RELATED |
Ama08969 | NUCLEOLAR AND SPINDLE-ASSOCIATED PROTEIN 1 |
Ama08970 | GEO11419P1 |
Ama08971 | TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN |
Ama08972 | DEHYDROGENASE/REDUCTASE SDR FAMILY MEMBER 7-RELATED |
Ama08973 | TYROSINE-PROTEIN KINASE RECEPTOR |
Ama08974 | |
Ama08977 | DNA-DIRECTED RNA POLYMERASE |
Ama08978 | NEPHROCYSTIN |
Ama08979 | |
Ama08980 | UNCHARACTERIZED |
Ama08981 | UNCHARACTERIZED |
Ama08982 | HEAT SHOCK 70 KDA PROTEIN 14 |
Ama08983 | KELCH REPEAT DOMAIN |
Ama08984 | TYROSINE-PROTEIN KINASE RECEPTOR |
Ama08985 | SUSHI DOMAIN-CONTAINING PROTEIN 6 |
Ama08986 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Ama08987 | TRNA METHYLTRANSFERASE |
Ama08989 | SPROUTY-RELATED, EVH1 DOMAIN-CONTAINING PROTEIN FAMILY MEMBER |
Ama08993 | SQUAMOUS CELL CARCINOMA ANTIGEN RECOGNISED BY CYTOTOXIC T LYMPHOCYTES |
Ama08994 | MAMMALIAN EPENDYMIN-RELATED PROTEIN 1 |
Ama08995 | |
Ama08996 | MAMMALIAN EPENDYMIN-RELATED PROTEIN 1 |
Ama08997 | PROTEIN STPG4 |
Ama08999 | EGL NINE HOMOLOG-RELATED |
Ama09001 | SIGNAL PEPTIDE PEPTIDASE |
Ama09002 | GLE-1-RELATED |
Ama09004 | YDJC DEACETYLASE FAMILY MEMBER |
Ama09005 | ENOYL-COA HYDRATASE |
Ama09006 | |
Ama09007 | PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS F PROTEIN-RELATED |
Ama09008 | CORNICHON-RELATED |
Ama09009 | |
Ama09010 | CYTOKINE RECEPTOR |
Ama09011 | CYTOKINE RECEPTOR |
Ama09012 | CYTOKINE RECEPTOR |