The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama08682 | RAB GDP/GTP EXCHANGE FACTOR |
Ama08683 | UNCHARACTERIZED |
Ama08685 | PALMITOYLTRANSFERASE ZDHHC16 |
Ama08686 | UBX DOMAIN-CONTAINING PROTEIN 1 |
Ama08687 | TNF RECEPTOR ASSOCIATED FACTOR |
Ama08688 | E3 UBIQUITIN-PROTEIN LIGASE UBR7 |
Ama08689 | PROTEIN, PUTATIVE-RELATED |
Ama08690 | |
Ama08691 | MOLYBDOPTERIN COFACTOR SYNTHESIS PROTEIN A |
Ama08693 | IP01015P-RELATED |
Ama08694 | PUTATIVE-RELATED |
Ama08695 | HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED |
Ama08696 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Ama08697 | |
Ama08698 | UNCHARACTERIZED |
Ama08699 | |
Ama08700 | |
Ama08701 | |
Ama08702 | SEROLOGICALLY DEFINED COLON CANCER ANTIGEN 8 |
Ama08704 | PROTEIN DISPATCHED-RELATED |
Ama08705 | TRANSPOSON |
Ama08706 | |
Ama08708 | |
Ama08709 | |
Ama08711 | T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN |
Ama08712 | DNAJ HOMOLOG SUBFAMILY C MEMBER 4 |
Ama08713 | |
Ama08714 | SOLUTE CARRIER FAMILY 39 ZINC TRANSPORTER , MEMBER 9-RELATED |
Ama08716 | SOLUTE CARRIER FAMILY 39 ZINC TRANSPORTER , MEMBER 9-RELATED |
Ama08718 | |
Ama08720 | POTASSIUM CHANNEL, SUBFAMILY K |
Ama08721 | POTASSIUM CHANNEL, SUBFAMILY K |
Ama08722 | |
Ama08724 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
Ama08726 | |
Ama08727 | HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED |
Ama08728 | TUBERIN |
Ama08729 | TUBERIN |
Ama08730 | TWO PORE CHANNEL 3 |
Ama08731 | SMALL NUCLEAR RIBONUCLEOPROTEIN SM D2 |
Ama08732 | N-ALPHA-ACETYLTRANSFERASE 20 |
Ama08734 | ZGC:174356 |
Ama08735 | PRE-MRNA SPLICING FACTOR |
Ama08738 | FIBRONECTIN TYPE-III DOMAIN-CONTAINING PROTEIN-RELATED |
Ama08739 | SOWAH (DROSOPHILA) HOMOLOG |
Ama08740 | CDP-DIACYLGLYCEROL--GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE-RELATED |
Ama08742 | GLUCOSAMINE 6-PHOSPHATE N-ACETYLTRANSFERASE |
Ama08744 | |
Ama08745 | |
Ama08746 | EPITHELIAL MEMBRANE PROTEIN-RELATED |