The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama08452 | EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 6-RELATED |
Ama08453 | BLOC-1-RELATED COMPLEX SUBUNIT 5 |
Ama08455 | CELL DIVISION CYCLE 5-LIKE PROTEIN |
Ama08456 | |
Ama08457 | |
Ama08464 | DNA2/NAM7 HELICASE FAMILY |
Ama08471 | |
Ama08472 | |
Ama08474 | SOLUTE CARRIER FAMILY 22 MEMBER |
Ama08475 | SOLUTE CARRIER FAMILY 22 MEMBER |
Ama08477 | COILED-COIL ALPHA-HELICAL ROD PROTEIN 1 |
Ama08478 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Ama08480 | PROTEIN CBG10425 |
Ama08481 | REVERSE TRANSCRIPTASES |
Ama08486 | TESTIS-EXPRESSED PROTEIN 11 |
Ama08487 | ANTIBIOTIC RESISTANCE PROTEIN MCBG |
Ama08489 | UNNAMED PRODUCT |
Ama08493 | ATP-DEPENDENT RNA HELICASE DBP3 |
Ama08495 | PRE-MRNA-PROCESSING FACTOR 17 |
Ama08497 | |
Ama08498 | |
Ama08499 | |
Ama08500 | |
Ama08501 | G-PROTEIN COUPLED RECEPTOR |
Ama08503 | DNA REPLICATION-RELATED ELEMENT FACTOR, ISOFORM A |
Ama08504 | DNA REPLICATION-RELATED ELEMENT FACTOR, ISOFORM A |
Ama08505 | TYROSINE-PROTEIN KINASE RECEPTOR |
Ama08506 | PHYTANOYL-COA DIOXYGENASE DOMAIN CONTAINING 1 |
Ama08507 | |
Ama08508 | SERTA DOMAIN-CONTAINING PROTEIN 4 |
Ama08509 | NF-KAPPA-B INHIBITOR ALPHA |
Ama08511 | DNAJ HOMOLOG SUBFAMILY C MEMBER 4 |
Ama08512 | SECRETED MODULAR CALCIUM-BINDING PROTEIN |
Ama08516 | ACYLTRANSFERASE |
Ama08520 | VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL |
Ama08522 | CS DOMAIN-CONTAINING PROTEIN |
Ama08524 | RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR |
Ama08525 | INHIBITOR OF APOPTOSIS |
Ama08527 | SOLUTE CARRIER FAMILY 25 |
Ama08528 | UNCHARACTERIZED |
Ama08529 | CLE |
Ama08531 | YIP1 INTERACTING FACTOR HOMOLOG YIF1 PROTEIN |
Ama08532 | |
Ama08533 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
Ama08534 | THUMP DOMAIN-CONTAINING |
Ama08540 | GLUTAREDOXIN FAMILY MEMBER |
Ama08541 | SIMILAR TO RIKEN CDNA E130308A19 |
Ama08542 | TRANSCRIPTION TERMINATION FACTOR 2-RELATED |
Ama08543 | PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4 |
Ama08544 | TRANSCRIPTION TERMINATION FACTOR 2-RELATED |