The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
| Gene ID | Description |
|---|---|
| Ama08133 | |
| Ama08134 | |
| Ama08135 | |
| Ama08136 | AP ENDONUCLEASE |
| Ama08137 | |
| Ama08138 | |
| Ama08141 | |
| Ama08148 | AP ENDONUCLEASE |
| Ama08150 | DEOXYRIBONUCLEASE TATDN2-RELATED |
| Ama08151 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
| Ama08152 | |
| Ama08153 | DEOXYRIBONUCLEASE TATDN2-RELATED |
| Ama08154 | |
| Ama08157 | ADHESION G-PROTEIN COUPLED RECEPTOR |
| Ama08159 | |
| Ama08160 | |
| Ama08161 | G-PROTEIN COUPLED RECEPTOR 124-LIKE PROTEIN |
| Ama08162 | ADHESION G-PROTEIN COUPLED RECEPTOR |
| Ama08167 | |
| Ama08168 | ENDONUCLEASE-RELATED |
| Ama08170 | |
| Ama08171 | ENDONUCLEASE-RELATED |
| Ama08172 | |
| Ama08173 | ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED |
| Ama08174 | |
| Ama08176 | PROTEIN DISPATCHED-RELATED |
| Ama08177 | HISTIDINE-RICH GLYCOPROTEIN |
| Ama08179 | LP04239P |
| Ama08189 | |
| Ama08193 | |
| Ama08195 | ADHESION G-PROTEIN COUPLED RECEPTOR |
| Ama08199 | |
| Ama08200 | |
| Ama08202 | |
| Ama08203 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| Ama08204 | - |
| Ama08205 | INHIBITOR OF APOPTOSIS |
| Ama08206 | RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR |
| Ama08207 | COMPLEMENT FACTOR H-RELATED |
| Ama08209 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| Ama08210 | |
| Ama08211 | |
| Ama08212 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| Ama08213 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Ama08214 | |
| Ama08215 | |
| Ama08216 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| Ama08217 | |
| Ama08218 | |
| Ama08220 | - |
