The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
| Gene ID | Description |
|---|---|
| Ama07926 | PROTEIN PHOSPHATASE |
| Ama07927 | PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4 |
| Ama07928 | OPSIN |
| Ama07931 | MRNA-CAPPING ENZYME |
| Ama07934 | APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR. |
| Ama07935 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |
| Ama07936 | APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR. |
| Ama07937 | |
| Ama07938 | PUTATIVE-RELATED |
| Ama07939 | |
| Ama07940 | SEC15 |
| Ama07941 | |
| Ama07942 | |
| Ama07943 | NEUROTRANSMITTER GATED ION CHANNEL |
| Ama07944 | |
| Ama07945 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Ama07949 | |
| Ama07950 | VACUOLAR ATP SYNTHASE SUBUNIT H |
| Ama07951 | ADAM A DISINTEGRIN AND METALLOPROTEASE DOMAIN |
| Ama07952 | MANNOSYL PHOSPHORYLINOSITOL CERAMIDE SYNTHASE |
| Ama07953 | TOLL-LIKE RECEPTOR |
| Ama07954 | |
| Ama07957 | |
| Ama07958 | HISTIDINE-RICH GLYCOPROTEIN |
| Ama07959 | LP04239P |
| Ama07963 | |
| Ama07965 | ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED |
| Ama07967 | |
| Ama07970 | |
| Ama07971 | ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4 |
| Ama07972 | UNCHARACTERIZED |
| Ama07973 | |
| Ama07974 | |
| Ama07975 | |
| Ama07976 | |
| Ama07977 | |
| Ama07978 | |
| Ama07979 | |
| Ama07980 | ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4 |
| Ama07981 | UNCHARACTERIZED |
| Ama07982 | |
| Ama07983 | THAP DOMAIN-CONTAINING PROTEIN 2 |
| Ama07984 | INTEGRASE CORE DOMAIN CONTAINING PROTEIN |
| Ama07985 | |
| Ama07986 | |
| Ama07987 | UNCHARACTERIZED |
| Ama07988 | UNCHARACTERIZED |
| Ama07989 | UNCHARACTERIZED |
| Ama07990 | UNCHARACTERIZED |
| Ama07991 |
