The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
| Gene ID | Description |
|---|---|
| Ama08747 | DEFECTIVE SPERMATOGENESIS PROTEIN 39 |
| Ama08748 | KELCH DOMAIN-CONTAINING PROTEIN 3 |
| Ama08749 | TETRATRICOPEPTIDE REPEAT PROTEIN 22 |
| Ama08750 | GLUTATHIONE PEROXIDASE |
| Ama08751 | FORKHEAD BOX PROTEIN |
| Ama08752 | MALATE DEHYDROGENASE |
| Ama08755 | ROLLING PEBBLES, ISOFORM B |
| Ama08756 | RAS-RELATED PROTEIN RAB |
| Ama08757 | RAS-RELATED PROTEIN RAB |
| Ama08758 | RAS-RELATED PROTEIN RAB |
| Ama08759 | UNCHARACTERIZED |
| Ama08760 | MOLYBDENUM COFACTOR BIOSYNTHESIS |
| Ama08761 | MOLYBDOPTERIN BIOSYNTHESIS PROTEIN |
| Ama08762 | |
| Ama08763 | SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY 9C |
| Ama08764 | SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY 9C |
| Ama08765 | |
| Ama08766 | SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY 9C |
| Ama08767 | |
| Ama08768 | ADENOSINE/GUANOSINE DIPHOSPHATASE |
| Ama08774 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
| Ama08775 | |
| Ama08776 | ALPHA- 1,6 -FUCOSYLTRANSFERASE |
| Ama08777 | UNCHARACTERIZED |
| Ama08778 | SIMILAR TO RIKEN CDNA E130308A19 |
| Ama08779 | SORTING NEXIN FAMILY MEMBER |
| Ama08782 | COILED-COIL DOMAIN-CONTAINING PROTEIN 175 |
| Ama08784 | LP10445P |
| Ama08785 | ZGC:174356 |
| Ama08786 | |
| Ama08787 | ATP-DEPENDENT RNA HELICASE DBP3 |
| Ama08788 | FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER |
| Ama08789 | FANCONI ANEMIA GROUP M FANCM FAMILY MEMBER |
| Ama08790 | UNCHARACTERIZED |
| Ama08791 | |
| Ama08794 | GLUTAMINYL-PEPTIDE CYCLOTRANSFERASE |
| Ama08795 | |
| Ama08796 | APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR. |
| Ama08797 | UBIQUITIN |
| Ama08798 | NISCHARIN RELATED |
| Ama08799 | MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S10 |
| Ama08800 | RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN |
| Ama08801 | MAJOR FACILITATOR SUPERFAMILY PROTEIN-RELATED |
| Ama08810 | SEL-1-LIKE PROTEIN |
| Ama08811 | RHO FAMILY GTPASE |
| Ama08812 | |
| Ama08813 | TYROSINE SPECIFIC PROTEIN PHOSPHATASE AND DUAL SPECIFICITY PROTEIN PHOSPHATASE |
| Ama08818 | TGF-BETA FAMILY |
| Ama08819 | UNCHARACTERIZED |
| Ama08820 | INOSITOL-TETRAKISPHOSPHATE 1-KINASE |
