The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
| Gene ID | Description |
|---|---|
| Ama07282 | |
| Ama07283 | CYPHER, ISOFORM B |
| Ama07284 | |
| Ama07285 | |
| Ama07286 | |
| Ama07287 | |
| Ama07288 | |
| Ama07289 | - |
| Ama07291 | |
| Ama07292 | |
| Ama07293 | QUINONE OXIDOREDUCTASE PIG3-RELATED |
| Ama07295 | TRANSMEMBRANE PROTEIN 181 |
| Ama07297 | NEUROLIGIN |
| Ama07299 | REGULATOR OF MICROTUBULE DYNAMICS PROTEIN |
| Ama07302 | |
| Ama07303 | |
| Ama07304 | D-ALANYL-D-ALANINE-CARBOXYPEPTIDASE/ENDOPEPTIDASE AMPH |
| Ama07305 | |
| Ama07306 | BLOC-1-RELATED COMPLEX SUBUNIT 5 |
| Ama07307 | |
| Ama07308 | KINESIN-LIKE PROTEIN KLP-3 |
| Ama07310 | UNCHARACTERIZED DUF1167 |
| Ama07311 | - |
| Ama07312 | TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN |
| Ama07314 | CALCIPRESSIN |
| Ama07315 | SODIUM/CHLORIDE DEPENDENT TRANSPORTER |
| Ama07316 | TRANSPOSON |
| Ama07317 | METALLOPROTEASE TLDD |
| Ama07318 | T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN |
| Ama07319 | TAXILIN |
| Ama07320 | HEADCASE PROTEIN |
| Ama07321 | PROTEIN CBG20488 |
| Ama07322 | PROTEIN CBG20488 |
| Ama07323 | UNCHARACTERIZED |
| Ama07329 | CYCLIC NUCLEOTIDE PHOSPHODIESTERASE |
| Ama07330 | |
| Ama07332 | |
| Ama07333 | |
| Ama07334 | |
| Ama07335 | |
| Ama07336 | |
| Ama07337 | PEST PROTEOLYTIC SIGNAL-CONTAINING NUCLEAR PROTEIN |
| Ama07338 | ANDROGLOBIN |
| Ama07339 | NON-HOMOLOGOUS END-JOINING FACTOR 1 |
| Ama07340 | HISTONE ACETYLTRANSFERASE TYPE B CATALYTIC SUBUNIT |
| Ama07345 | ARYL HYDROCARBON RECEPTOR |
| Ama07347 | |
| Ama07348 | BTB/POZ DOMAIN-CONTAINING |
| Ama07349 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Ama07350 |
