The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama07057 | 3-HYDROXYACYL-COA DEHYDROGENASE FAMILY PROTEIN |
Ama07060 | LETHAL 2 GIANT LARVAE PROTEIN |
Ama07062 | PR DOMAIN ZINC FINGER PROTEIN |
Ama07064 | FRUCTOSE-2,6-BISPHOSPHATASE TIGAR |
Ama07065 | |
Ama07066 | INOSITOL 5-PHOSPHATASE |
Ama07068 | RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR |
Ama07069 | INHIBITOR OF APOPTOSIS |
Ama07070 | RIBOSOMAL PROTEIN S6 KINASE |
Ama07071 | DNA-DIRECTED RNA POLYMERASE SUBUNIT K |
Ama07072 | RAB GTPASE-ACTIVATING PROTEIN 1-LIKE |
Ama07075 | |
Ama07077 | MONOCARBOXYLATE TRANSPORTER |
Ama07078 | |
Ama07079 | STYLE CELL-CYCLE INHIBITOR 1 |
Ama07080 | UNCHARACTERIZED |
Ama07081 | UNCHARACTERIZED |
Ama07082 | MANNOSYL-OLIGOSACCHARIDE ALPHA-1,2-MANNOSIDASE-RELATED |
Ama07083 | |
Ama07084 | METHYLOSOME PROTEIN 50 |
Ama07085 | CULLIN |
Ama07086 | CULLIN |
Ama07087 | TUBULIN |
Ama07088 | TUBULIN |
Ama07090 | - |
Ama07093 | MAP KINASE KINASE KINASE SSK2-RELATED-RELATED |
Ama07094 | COILED-COIL DOMAIN-CONTAINING PROTEIN 181 |
Ama07095 | THIOREDOXIN PEROXIDASE |
Ama07097 | |
Ama07098 | SODIUM/CHLORIDE DEPENDENT TRANSPORTER |
Ama07100 | ARGININE-TRNA-PROTEIN TRANSFERASE 1 |
Ama07101 | |
Ama07102 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Ama07103 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |
Ama07104 | PUTATIVE-RELATED |
Ama07105 | |
Ama07106 | |
Ama07107 | THAP DOMAIN PROTEIN |
Ama07108 | ATP-DEPENDENT DNA HELICASE |
Ama07109 | ULP_PROTEASE DOMAIN-CONTAINING PROTEIN |
Ama07110 | PUTATIVE-RELATED |
Ama07111 | ULP_PROTEASE DOMAIN-CONTAINING PROTEIN |
Ama07112 | HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED |
Ama07113 | |
Ama07114 | GCIP-INTERACTING PROTEIN P29 |
Ama07115 | UFM1-SPECIFIC PROTEASE 2 |
Ama07117 | FIBRONECTIN TYPE-III DOMAIN-CONTAINING PROTEIN-RELATED |
Ama07118 | PROTEIN SON |
Ama07119 | |
Ama07121 | BRIX DOMAIN CONTAINING PROTEIN |