The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama07122 | TUBULIN--TYROSINE LIGASE-LIKE PROTEIN 12 |
Ama07123 | |
Ama07124 | LD21662P |
Ama07125 | ALCOHOL DEHYDROGENASE RELATED |
Ama07126 | SODIUM-DEPENDENT GLUCOSE TRANSPORTER 1 |
Ama07127 | SODIUM-DEPENDENT GLUCOSE TRANSPORTER 1 |
Ama07128 | |
Ama07130 | |
Ama07131 | |
Ama07133 | SERINE/THREONINE-PROTEIN KINASE |
Ama07137 | |
Ama07138 | |
Ama07139 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN |
Ama07140 | THAP DOMAIN PROTEIN |
Ama07141 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |
Ama07143 | LYMPHOID-RESTRICTED MEMBRANE PROTEIN, JAW1 |
Ama07146 | EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED |
Ama07147 | DOCKING PROTEIN RELATED |
Ama07148 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Ama07150 | UNCHARACTERIZED |
Ama07152 | TOL-PAL SYSTEM PROTEIN TOLB |
Ama07155 | |
Ama07156 | - |
Ama07157 | CARBOHYDRATE SULFOTRANSFERASE |
Ama07158 | |
Ama07166 | |
Ama07170 | BIOTIN PROTEIN LIGASE |
Ama07172 | HYPOXIA-INDUCIBLE FACTOR 1 ALPHA |
Ama07174 | |
Ama07175 | IMPORTIN ALPHA |
Ama07176 | |
Ama07177 | |
Ama07179 | PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 12 |
Ama07181 | PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 12 |
Ama07182 | MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S28 |
Ama07183 | IP21249P |
Ama07184 | IP21249P |
Ama07186 | IP21249P |
Ama07187 | ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED |
Ama07191 | NUCLEOPORIN NUP43 |
Ama07192 | SYNAPTIC VESICLE GLYCOPROTEIN 2 |
Ama07194 | SYNAPTIC VESICLE GLYCOPROTEIN 2 |
Ama07195 | |
Ama07196 | ACID AMIDASE |
Ama07197 | ARGININE OR CREATINE KINASE |
Ama07198 | RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR AT 64C, ISOFORM A |
Ama07199 | SH3 DOMAIN-CONTAINING |
Ama07200 | PROTEIN SEY1 |
Ama07201 | |
Ama07202 | EH DOMAIN |