The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama06729 | BASIC HELIX-LOOP-HELIX PROTEIN NEUROGENIN-RELATED |
Ama06730 | SOLUTE CARRIER FAMILY 22 MEMBER |
Ama06731 | TUBULIN |
Ama06732 | POPEYE DOMAIN CONTAINING PROTEIN |
Ama06733 | TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) |
Ama06734 | TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) |
Ama06735 | |
Ama06736 | |
Ama06737 | |
Ama06738 | UNCHARACTERIZED |
Ama06739 | INTERLEUKIN-1 RECEPTOR-ASSOCIATED KINASE 1-BINDING PROTEIN 1 |
Ama06740 | POPEYE DOMAIN CONTAINING PROTEIN |
Ama06741 | CHITIN-BINDING TYPE-4 DOMAIN-CONTAINING PROTEIN |
Ama06742 | UBIQUITIN THIOESTERASE |
Ama06743 | FATTY-ACID AMIDE HYDROLASE |
Ama06744 | |
Ama06745 | SOLUTE CARRIER FAMILY 22 MEMBER |
Ama06746 | SOLUTE CARRIER FAMILY 22 MEMBER |
Ama06747 | |
Ama06748 | SODIUM/CHLORIDE DEPENDENT TRANSPORTER |
Ama06749 | |
Ama06750 | - |
Ama06751 | RWD DOMAIN-CONTAINING PROTEIN |
Ama06752 | |
Ama06753 | YCCV-LIKE DOMAIN-CONTAINING PROTEIN |
Ama06755 | RAS-LIKE FAMILY MEMBER 11 |
Ama06756 | TUMOR SUSCEPTIBILITY GENE 101 PROTEIN-RELATED |
Ama06757 | |
Ama06758 | |
Ama06759 | RAS-LIKE FAMILY MEMBER 11 |
Ama06760 | TRANSPOSABLE ELEMENT-RELATED |
Ama06761 | CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN |
Ama06762 | ZINC FINGER PROTEIN |
Ama06763 | ZINC FINGER PROTEIN 142 |
Ama06764 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Ama06765 | INHIBITOR OF APOPTOSIS |
Ama06766 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN |
Ama06767 | |
Ama06770 | |
Ama06772 | UNCHARACTERIZED |
Ama06773 | PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B |
Ama06774 | SERINE/THREONINE-PROTEIN KINASE PLK |
Ama06775 | RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR |
Ama06776 | INHIBITOR OF APOPTOSIS |
Ama06777 | DNA POLYMERASE ZETA CATALYTIC SUBUNIT |
Ama06779 | SNF2/RAD54 HELICASE FAMILY |
Ama06780 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Ama06781 | TUBBY-RELATED |
Ama06782 | |
Ama06784 | PROSTATE APOPTOSIS RESPONSE PROTEIN PAR-4 |