The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama06580 | BONUS, ISOFORM C-RELATED |
Ama06581 | PERFORIN-LIKE PROTEIN 1 |
Ama06584 | NADPH OXIDASE |
Ama06586 | |
Ama06587 | 5-HYDROXYTRYPTAMINE RECEPTOR |
Ama06588 | |
Ama06590 | NADPH OXIDASE |
Ama06591 | ATP SYNTHASE DELTA CHAIN |
Ama06593 | |
Ama06594 | SPINAL CORD EXPRESSION PROTEIN 4 |
Ama06595 | LANC-LIKE PROTEIN |
Ama06598 | |
Ama06599 | T-CELL ACTIVATION RHO GTPASE ACTIVATING PROTEIN-RELATED |
Ama06603 | |
Ama06604 | TRANSGELIN |
Ama06605 | RHO GTPASE-ACTIVATING PROTEIN 68F |
Ama06606 | METHYLTRANSF_11 DOMAIN-CONTAINING PROTEIN |
Ama06611 | ANION EXCHANGE PROTEIN |
Ama06612 | AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 |
Ama06613 | PROTEIN CBG04600 |
Ama06614 | TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 12 |
Ama06615 | TRANSDUCIN BETA-LIKE 3 |
Ama06616 | ADAM10/ADAM17 METALLOPEPTIDASE FAMILY MEMBER |
Ama06617 | |
Ama06618 | INNER CENTROMERE PROTEIN |
Ama06619 | RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY |
Ama06620 | TRANSPOSON |
Ama06622 | WU:FJ29H11 |
Ama06623 | |
Ama06624 | ZINC FINGER PROTEIN |
Ama06625 | ZINC FINGER AND SCAN DOMAIN-CONTAINING |
Ama06626 | ZINC FINGER PROTEIN |
Ama06628 | ZINC FINGER PROTEIN |
Ama06629 | ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE |
Ama06630 | ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE |
Ama06631 | ECTONUCLEOTIDE PYROPHOSPHATASE/PHOSPHODIESTERASE |
Ama06635 | METABOTROPIC GLUTAMATE RECEPTOR |
Ama06637 | |
Ama06638 | TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN |
Ama06639 | REVERSE TRANSCRIPTASES |
Ama06641 | |
Ama06642 | ANKYRIN REPEAT FAMILY A |
Ama06644 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS |
Ama06645 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL PROTEIN PAINLESS |
Ama06646 | SMALL ACIDIC PROTEIN-RELATED |
Ama06647 | UPF0240 PROTEIN |
Ama06648 | CLATHRIN ASSEMBLY PROTEIN |
Ama06650 | N4BP1-RELATED |
Ama06651 | |
Ama06652 | MYOSIN LIGHT CHAIN 1, 3 |