The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama06653 | UNCHARACTERIZED |
Ama06654 | |
Ama06656 | 30S/40S RIBOSOMAL PROTEIN S4 |
Ama06657 | ZINC FINGER PROTEIN |
Ama06658 | MOLTING PROTEIN MLT-4 |
Ama06659 | AP ENDONUCLEASE |
Ama06660 | MAP/MICROTUBULE AFFINITY-REGULATING KINASE |
Ama06661 | CLEAVAGE STIMULATION FACTOR SUBUNIT 2 |
Ama06663 | UNCHARACTERIZED |
Ama06664 | |
Ama06666 | |
Ama06669 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
Ama06670 | NUCLEAR HORMONE RECEPTOR |
Ama06671 | DUF3504 DOMAIN-CONTAINING PROTEIN |
Ama06672 | AFADIN |
Ama06673 | AFADIN |
Ama06674 | AFADIN |
Ama06675 | INTRAFLAGELLAR TRANSPORT PROTEIN 88 HOMOLOG |
Ama06682 | |
Ama06683 | |
Ama06684 | |
Ama06685 | 50S RIBOSOMAL PROTEIN L21 |
Ama06686 | PROTEIN ARGININE N-METHYLTRANSFERASE |
Ama06689 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Ama06690 | |
Ama06691 | |
Ama06692 | TRANSPOSON |
Ama06693 | BONUS, ISOFORM C-RELATED |
Ama06694 | SODIUM-DEPENDENT GLUCOSE TRANSPORTER 1 |
Ama06695 | SODIUM-DEPENDENT GLUCOSE TRANSPORTER 1 |
Ama06697 | BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST |
Ama06704 | BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST |
Ama06705 | BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST |
Ama06706 | PR DOMAIN ZINC FINGER PROTEIN |
Ama06707 | |
Ama06709 | |
Ama06711 | |
Ama06713 | ZINC FINGER PROTEIN 294 |
Ama06714 | PROTEASOME SUBUNIT ALPHA/BETA |
Ama06715 | FOUR-JOINTED BOX PROTEIN 1 |
Ama06716 | FOUR-JOINTED BOX PROTEIN 1 |
Ama06719 | |
Ama06720 | 28S RIBOSOMAL PROTEIN S15, MITOCHONDRIAL |
Ama06721 | PARKIN COREGULATED GENE PROTEIN PARK2 COREGULATED |
Ama06723 | |
Ama06724 | U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 11 |
Ama06725 | |
Ama06726 | DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2 |
Ama06727 | SOLUTE CARRIER FAMILY 22 MEMBER |
Ama06728 | RIBOSOMAL PROTEIN S9 |