About Archivesica marissinica

The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Archivesica marissinicaMolluscaDeep-Sea ClamHydrothermal vent1,361Haima cold seep in the South China Sea2291877

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
ASM1484369v11.5GbChromosome2020JABXNX01Hong Kong Baptist UniversityPRJNA62989893.50%28,949

References
TitleJournalPubmed ID
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic ClamMolecular Biology and Evolution32956455

Gene Information

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Gene IDDescription
Ama38055SMAD
Ama38056SMAD
Ama38057DYMECLIN
Ama38058MONOCARBOXYLATE TRANSPORTER
Ama38059
Ama38060ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Ama38061CLASS IV SAM-BINDING METHYLTRANSFERASE-RELATED
Ama38062DYMECLIN
Ama38063URIDINE KINASE
Ama38064PREFOLDIN SUBUNIT 6
Ama38065
Ama38066
Ama38067GLYCOPROTEIN HORMONE RECEPTOR
Ama38069PLASMINOGEN-RELATED
Ama38071
Ama38072
Ama38073
Ama38074
Ama38076
Ama38077
Ama38078CXC DOMAIN-CONTAINING PROTEIN-RELATED
Ama38079
Ama38080AMP-BINDING DOMAIN-CONTAINING PROTEIN
Ama38082REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Ama38083CRUMBS FAMILY MEMBER
Ama38084
Ama38085CRUMBS FAMILY MEMBER
Ama38086
Ama38088
Ama38089
Ama38090
Ama38091MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Ama38094VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13
Ama38095PEPTIDASE
Ama38096MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
Ama38097
Ama38098
Ama38099
Ama380_5db7b01aC1ORF189
Ama38100VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13
Ama38101VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13
Ama38102
Ama38103VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN VPS13
Ama38104
Ama38105ATP-BINDING CASSETTE SUB-FAMILY C
Ama38106ATP-BINDING CASSETTE SUB-FAMILY C
Ama38107RAN BINDING PROTEIN 9-RELATED
Ama38109UNCHARACTERIZED
Ama38110
Ama38111PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
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