The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama37644 | SRCR DOMAIN-CONTAINING PROTEIN |
Ama37645 | SCAVENGER RECEPTOR DOMAIN-CONTAINING |
Ama37646 | ENDOGLIN/TGF-BETA RECEPTOR TYPE III |
Ama37647 | SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER |
Ama37648 | SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER |
Ama37649 | |
Ama37650 | |
Ama37651 | SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER |
Ama37652 | TRANSPOSON |
Ama37654 | IP13529P |
Ama37655 | |
Ama37656 | OLIGORIBONUCLEASE, MITOCHONDRIAL |
Ama37657 | |
Ama37658 | |
Ama37659 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN |
Ama37660 | THAP DOMAIN PROTEIN |
Ama37661 | PUTATIVE-RELATED |
Ama37665 | RIKEN CDNA D130052B06 GENE |
Ama37668 | |
Ama37671 | |
Ama37673 | NADPH OXIDASE |
Ama37674 | NADPH OXIDASE |
Ama37675 | |
Ama37680 | ALPHA-(1,3)-FUCOSYLTRANSFERASE C-RELATED |
Ama37681 | |
Ama37682 | |
Ama37684 | |
Ama37687 | |
Ama37688 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |
Ama37689 | |
Ama37692 | ATP-BINDING CASSETTE SUB-FAMILY C |
Ama37693 | SET DOMAIN-CONTAINING PROTEIN-RELATED |
Ama37695 | PLACENTAL PROTEIN 6 |
Ama37696 | TRANSPOSON |
Ama37697 | |
Ama37698 | |
Ama37699 | SET DOMAIN-CONTAINING PROTEIN-RELATED |
Ama376_5db7b01a | G-PROTEIN COUPLED RECEPTOR |
Ama37700 | |
Ama37702 | |
Ama37703 | |
Ama37704 | SET DOMAIN-CONTAINING PROTEIN-RELATED |
Ama37705 | TRANSPOSON |
Ama37706 | |
Ama37707 | |
Ama37709 | APPLE DOMAIN-CONTAINING PROTEIN |
Ama37710 | |
Ama37711 | PLACENTAL PROTEIN 6 |
Ama37714 | APPLE DOMAIN-CONTAINING PROTEIN |
Ama37716 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |