Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_022640-T1 | AQUAPORIN TRANSPORTER |
LLU|FUN_022641-T1 | |
LLU|FUN_022642-T1 | CYTOCHROME B561/FERRIC REDUCTASE TRANSMEMBRANE |
LLU|FUN_022643-T1 | IRE1-RELATED |
LLU|FUN_022644-T1 | |
LLU|FUN_022645-T1 | |
LLU|FUN_022646-T1 | |
LLU|FUN_022647-T1 | U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD |
LLU|FUN_022648-T1 | |
LLU|FUN_022649-T1 | |
LLU|FUN_022650-T1 | ARRESTIN DOMAIN CONTAINING PROTEIN |
LLU|FUN_022651-T1 | GTP-BINDING PROTEIN ALPHA SUBUNIT |
LLU|FUN_022652-T1 | GTP-BINDING PROTEIN ALPHA SUBUNIT |
LLU|FUN_022653-T1 | |
LLU|FUN_022654-T1 | EGALITARIAN, ISOFORM B |
LLU|FUN_022655-T1 | COMPLEX III ASSEMBLY FACTOR LYRM7 |
LLU|FUN_022656-T1 | TRANSMEMBRANE PROTEIN 232 |
LLU|FUN_022657-T1 | GUANINE DEAMINASE |
LLU|FUN_022658-T1 | G-PROTEIN COUPLED RECEPTOR |
LLU|FUN_022659-T1 | ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED |
LLU|FUN_022660-T1 | ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED |
LLU|FUN_022661-T1 | |
LLU|FUN_022662-T1 | |
LLU|FUN_022663-T1 | RAS-RELATED PROTEIN RAB |
LLU|FUN_022664-T1 | RIBULOKINASE |
LLU|FUN_022665-T1 | RAN BINDING PROTEIN |
LLU|FUN_022666-T1 | SIMILAR TO HYPOTHETICAL PROTEIN MGC34837 |
LLU|FUN_022667-T1 | 40S RIBOSOMAL PROTEIN S28 |
LLU|FUN_022668-T1 | |
LLU|FUN_022669-T1 | |
LLU|FUN_022670-T1 | NADH-UBIQUINONE OXIDOREDUCTASE SUBUNIT B |
LLU|FUN_022671-T1 | |
LLU|FUN_022672-T1 | G-PROTEIN COUPLED RECEPTOR |
LLU|FUN_022673-T1 | E3 UBIQUITIN-PROTEIN LIGASE MIB2 |
LLU|FUN_022674-T1 | |
LLU|FUN_022675-T1 | |
LLU|FUN_022676-T1 | |
LLU|FUN_022677-T1 | |
LLU|FUN_022678-T1 | |
LLU|FUN_022679-T1 | |
LLU|FUN_022680-T1 | |
LLU|FUN_022681-T1 | TRANSMEMBRANE 7 SUPERFAMILY MEMBER 3 |
LLU|FUN_022682-T1 | ABC TRANSPORTER B FAMILY |
LLU|FUN_022683-T1 | |
LLU|FUN_022684-T1 | |
LLU|FUN_022685-T1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
LLU|FUN_022686-T1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
LLU|FUN_022687-T1 | |
LLU|FUN_022688-T1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
LLU|FUN_022689-T1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |