About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.

Classification

Animalia (Kingdom); Annelida (Phylum); Polychaeta (Class); Sedentaria (Subclass); Canalipalpata (Infraclass); Sabellida (Order); Siboglinidae (Family); Lamellibrachia (Genus); Lamellibrachia luymesi (Species)

Original Name

Lamellibrachia luymesi van der Land & Nørrevang, 1975

Key Reference Paper

1. VAN DER LAND J. The systematic position of Lamellibrachia (Annelida, Vestimentifera)[J]. Zeitschrift fur Zoologische Systematik und Evolutionsforschung, Sonderheft, 1975, 1975: 86-101. (Land et al., 1975)

Etymology

Not stated. Perhaps (from the locality information given) named after a research vessel named "Luymes", in turn named after the hydrographer Johan Lambertus Hendrikus Luymes

Distribution

continental slope off Guyana, S America, North Atlantic Ocean, 8.0167, -57.4° (8 1' N, 57 24' W) "Luymes" Guyana Shelf Exp. sta. 101, depth 500 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA51646795.80 373/24.140.1636.9238,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_000001-T1HISTONE H3
LLU|FUN_000002-T1HISTONE H3
LLU|FUN_000003-T1KETOACID-COENZYME A TRANSFERASE
LLU|FUN_000004-T1AB HYDROLASE SUPERFAMILY PROTEIN C4A8.06C
LLU|FUN_000005-T1-
LLU|FUN_000006-T1TGF-BETA FAMILY
LLU|FUN_000007-T1-
LLU|FUN_000008-T1-
LLU|FUN_000009-T1-
LLU|FUN_000010-T1-
LLU|FUN_000011-T1-
LLU|FUN_000012-T1-
LLU|FUN_000013-T1-
LLU|FUN_000014-T1-
LLU|FUN_000015-T1-
LLU|FUN_000016-T1-
LLU|FUN_000017-T1-
LLU|FUN_000018-T1CENTROSOMAL PROTEIN-RELATED
LLU|FUN_000019-T1-
LLU|FUN_000020-T1-

Results of comparison between Lamellibrachia luymesi and its nearshore relatives from the paper (Li et al., 2019)

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Annotation IDDescriptionTypeSubtypeGeneRatioEvolution TypeP-valueQ-value
PTHR23145NUCLEOSOMAL BINDING PROTEIN 1PANTHER--expanded--
PTHR19297GLYCOSYLTRANSFERASE 14 FAMILY MEMBERPANTHER--expanded--
PTHR24243G-PROTEIN COUPLED RECEPTORPANTHER--expanded--
PTHR10796PATCHED-RELATEDPANTHER--expanded--
PTHR10796PATCHED-RELATEDPANTHER--expanded--
PTHR45240ZINC METALLOPROTEINASE NASPANTHER--expanded--
PTHR10773DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2PANTHER--expanded--
PTHR12673FACIOGENITAL DYSPLASIA PROTEINPANTHER--expanded--
PTHR11514MYCPANTHER--expanded--
PTHR31569ZINC FINGER SWIM DOMAIN-CONTAINING PROTEINPANTHER--expanded--
PTHR44252CARBONYL REDUCTASE NADPHPANTHER--expanded--
PTHR11360MONOCARBOXYLATE TRANSPORTERPANTHER--expanded--
PTHR13954IRE1-RELATEDPANTHER--expanded--
PTHR24280CYTOCHROME P450 20A1PANTHER--expanded--
PTHR16897CARNOSINE N-METHYLTRANSFERASEPANTHER--expanded--
PTHR16897CARNOSINE N-METHYLTRANSFERASEPANTHER--expanded--
PTHR16897CARNOSINE N-METHYLTRANSFERASEPANTHER--expanded--
PTHR16897HISTAMINE N-METHYLTRANSFERASEPANTHER--expanded--
PTHR11799PARAOXONASEPANTHER--expanded--
PTHR16897CARNOSINE N-METHYLTRANSFERASEPANTHER--expanded--
PTHR16897CARNOSINE N-METHYLTRANSFERASEPANTHER--expanded--
PTHR16897CARNOSINE N-METHYLTRANSFERASEPANTHER--expanded--
PTHR16897HISTAMINE N-METHYLTRANSFERASEPANTHER--expanded--
PTHR11903PROSTAGLANDIN G/H SYNTHASEPANTHER--expanded--
PTHR23194PYGOPUSPANTHER--expanded--
PTHR31513GLYCINE-RICH PROTEINPANTHER--expanded--
PTHR20956HEH2PPANTHER--expanded--
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