About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_000051-T1EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 7
LLU|FUN_000052-T1E3 UBIQUITIN-PROTEIN LIGASE TOPORS
LLU|FUN_000053-T1SNF2/RAD54 FAMILY MEMBER
LLU|FUN_000054-T1ATP-DEPENDENT RNA AND DNA HELICASE
LLU|FUN_000055-T1ANTERIOR GRADIENT PROTEIN-RELATED
LLU|FUN_000056-T1CT120 PROTEIN
LLU|FUN_000057-T1GLYCOSYL TRANSFERASE-RELATED
LLU|FUN_000058-T1UNCHARACTERIZED
LLU|FUN_000059-T1
LLU|FUN_000060-T1
LLU|FUN_000061-T1
LLU|FUN_000062-T1RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY
LLU|FUN_000063-T1GUANINE NUCLEOTIDE-BINDING PROTEIN GAMMA SUBUNIT
LLU|FUN_000064-T1GUANINE NUCLEOTIDE-BINDING PROTEIN GAMMA SUBUNIT
LLU|FUN_000065-T1
LLU|FUN_000066-T1GUANINE NUCLEOTIDE-BINDING PROTEIN GAMMA SUBUNIT
LLU|FUN_000067-T1GUANINE NUCLEOTIDE-BINDING PROTEIN GAMMA SUBUNIT
LLU|FUN_000068-T1
LLU|FUN_000069-T1
LLU|FUN_000070-T1GROWTH ARREST AND DNA DAMAGE-INDUCIBLE PROTEIN GADD45
LLU|FUN_000071-T1
LLU|FUN_000072-T1RNA 3' TERMINAL PHOSPHATE CYCLASE
LLU|FUN_000073-T1DIHYDROLIPOAMIDE ACETYLTRANSFERASE COMPONENT OF PYRUVATE DEHYDROGENASE COMPLEX
LLU|FUN_000074-T1
LLU|FUN_000075-T1PROTEASE M1 ZINC METALLOPROTEASE
LLU|FUN_000076-T1PROTEASE M1 ZINC METALLOPROTEASE
LLU|FUN_000077-T1PROTEASE M1 ZINC METALLOPROTEASE
LLU|FUN_000078-T1PROTEASE M1 ZINC METALLOPROTEASE
LLU|FUN_000079-T1
LLU|FUN_000080-T1
LLU|FUN_000081-T1
LLU|FUN_000082-T1ODD-SKIPPED - RELATED
LLU|FUN_000083-T1STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 15
LLU|FUN_000084-T1DUF814-RELATED
LLU|FUN_000085-T1
LLU|FUN_000086-T1N-ACETYLTRANSFERASE ECO
LLU|FUN_000087-T1
LLU|FUN_000088-T1INTEGRAL MEMBRANE PROTEIN GPR177
LLU|FUN_000089-T1SYNAPTONEMAL COMPLEX CENTRAL ELEMENT PROTEIN 2
LLU|FUN_000090-T1
LLU|FUN_000091-T1
LLU|FUN_000092-T1
LLU|FUN_000093-T1PROTEIN CBG15099
LLU|FUN_000094-T1-
LLU|FUN_000095-T1-
LLU|FUN_000096-T1T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN
LLU|FUN_000097-T1RAB6A-GEF COMPLEX PARTNER PROTEIN 1
LLU|FUN_000098-T1UNCHARACTERIZED
LLU|FUN_000099-T1UV EXCISION REPAIR PROTEIN RAD23
LLU|FUN_000100-T1BETA-AMYLOID BINDING PROTEIN-RELATED
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