Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_000051-T1 | EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 7 |
LLU|FUN_000052-T1 | E3 UBIQUITIN-PROTEIN LIGASE TOPORS |
LLU|FUN_000053-T1 | SNF2/RAD54 FAMILY MEMBER |
LLU|FUN_000054-T1 | ATP-DEPENDENT RNA AND DNA HELICASE |
LLU|FUN_000055-T1 | ANTERIOR GRADIENT PROTEIN-RELATED |
LLU|FUN_000056-T1 | CT120 PROTEIN |
LLU|FUN_000057-T1 | GLYCOSYL TRANSFERASE-RELATED |
LLU|FUN_000058-T1 | UNCHARACTERIZED |
LLU|FUN_000059-T1 | |
LLU|FUN_000060-T1 | |
LLU|FUN_000061-T1 | |
LLU|FUN_000062-T1 | RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY |
LLU|FUN_000063-T1 | GUANINE NUCLEOTIDE-BINDING PROTEIN GAMMA SUBUNIT |
LLU|FUN_000064-T1 | GUANINE NUCLEOTIDE-BINDING PROTEIN GAMMA SUBUNIT |
LLU|FUN_000065-T1 | |
LLU|FUN_000066-T1 | GUANINE NUCLEOTIDE-BINDING PROTEIN GAMMA SUBUNIT |
LLU|FUN_000067-T1 | GUANINE NUCLEOTIDE-BINDING PROTEIN GAMMA SUBUNIT |
LLU|FUN_000068-T1 | |
LLU|FUN_000069-T1 | |
LLU|FUN_000070-T1 | GROWTH ARREST AND DNA DAMAGE-INDUCIBLE PROTEIN GADD45 |
LLU|FUN_000071-T1 | |
LLU|FUN_000072-T1 | RNA 3' TERMINAL PHOSPHATE CYCLASE |
LLU|FUN_000073-T1 | DIHYDROLIPOAMIDE ACETYLTRANSFERASE COMPONENT OF PYRUVATE DEHYDROGENASE COMPLEX |
LLU|FUN_000074-T1 | |
LLU|FUN_000075-T1 | PROTEASE M1 ZINC METALLOPROTEASE |
LLU|FUN_000076-T1 | PROTEASE M1 ZINC METALLOPROTEASE |
LLU|FUN_000077-T1 | PROTEASE M1 ZINC METALLOPROTEASE |
LLU|FUN_000078-T1 | PROTEASE M1 ZINC METALLOPROTEASE |
LLU|FUN_000079-T1 | |
LLU|FUN_000080-T1 | |
LLU|FUN_000081-T1 | |
LLU|FUN_000082-T1 | ODD-SKIPPED - RELATED |
LLU|FUN_000083-T1 | STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 15 |
LLU|FUN_000084-T1 | DUF814-RELATED |
LLU|FUN_000085-T1 | |
LLU|FUN_000086-T1 | N-ACETYLTRANSFERASE ECO |
LLU|FUN_000087-T1 | |
LLU|FUN_000088-T1 | INTEGRAL MEMBRANE PROTEIN GPR177 |
LLU|FUN_000089-T1 | SYNAPTONEMAL COMPLEX CENTRAL ELEMENT PROTEIN 2 |
LLU|FUN_000090-T1 | |
LLU|FUN_000091-T1 | |
LLU|FUN_000092-T1 | |
LLU|FUN_000093-T1 | PROTEIN CBG15099 |
LLU|FUN_000094-T1 | - |
LLU|FUN_000095-T1 | - |
LLU|FUN_000096-T1 | T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN |
LLU|FUN_000097-T1 | RAB6A-GEF COMPLEX PARTNER PROTEIN 1 |
LLU|FUN_000098-T1 | UNCHARACTERIZED |
LLU|FUN_000099-T1 | UV EXCISION REPAIR PROTEIN RAD23 |
LLU|FUN_000100-T1 | BETA-AMYLOID BINDING PROTEIN-RELATED |