About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_000001-T1HISTONE H3
LLU|FUN_000002-T1HISTONE H3
LLU|FUN_000003-T1KETOACID-COENZYME A TRANSFERASE
LLU|FUN_000004-T1AB HYDROLASE SUPERFAMILY PROTEIN C4A8.06C
LLU|FUN_000005-T1
LLU|FUN_000006-T1TGF-BETA FAMILY
LLU|FUN_000007-T1
LLU|FUN_000008-T1
LLU|FUN_000009-T1
LLU|FUN_000010-T1
LLU|FUN_000011-T1
LLU|FUN_000012-T1
LLU|FUN_000013-T1
LLU|FUN_000014-T1
LLU|FUN_000015-T1
LLU|FUN_000016-T1
LLU|FUN_000017-T1
LLU|FUN_000018-T1CENTROSOMAL PROTEIN-RELATED
LLU|FUN_000019-T1
LLU|FUN_000020-T1
LLU|FUN_000021-T1
LLU|FUN_000022-T1
LLU|FUN_000023-T1
LLU|FUN_000024-T140S RIBOSOMAL PROTEIN S12
LLU|FUN_000025-T1
LLU|FUN_000026-T1
LLU|FUN_000027-T1NOTCH LIGAND FAMILY MEMBER
LLU|FUN_000028-T1
LLU|FUN_000029-T1EGF-LIKE DOMAIN-CONTAINING PROTEIN
LLU|FUN_000030-T1
LLU|FUN_000031-T1
LLU|FUN_000032-T1
LLU|FUN_000033-T1
LLU|FUN_000034-T1
LLU|FUN_000035-T1
LLU|FUN_000036-T1
LLU|FUN_000037-T1BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST
LLU|FUN_000038-T1
LLU|FUN_000039-T1BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST
LLU|FUN_000040-T1STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 SMC5, SMC6
LLU|FUN_000041-T1DIMETHYLADENOSINE TRANSFERASE
LLU|FUN_000042-T1
LLU|FUN_000043-T1TETRATRICOPEPTIDE REPEAT PROTEIN 4
LLU|FUN_000044-T1DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER
LLU|FUN_000045-T1DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER
LLU|FUN_000046-T1JOUBERIN
LLU|FUN_000047-T1
LLU|FUN_000048-T1
LLU|FUN_000049-T1DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER
LLU|FUN_000050-T1UNCHARACTERIZED
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