Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_000404-T1 | |
LLU|FUN_000405-T1 | CXXC-TYPE ZINC FINGER PROTEIN 1 |
LLU|FUN_000406-T1 | DYNAMIN |
LLU|FUN_000407-T1 | SARCOMA ANTIGEN NY-SAR-95-RELATED |
LLU|FUN_000408-T1 | |
LLU|FUN_000409-T1 | CRUMBS FAMILY MEMBER |
LLU|FUN_000410-T1 | |
LLU|FUN_000411-T1 | CRUMBS FAMILY MEMBER |
LLU|FUN_000412-T1 | |
LLU|FUN_000413-T1 | |
LLU|FUN_000414-T1 | SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER |
LLU|FUN_000415-T1 | |
LLU|FUN_000416-T1 | SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER |
LLU|FUN_000417-T1 | |
LLU|FUN_000418-T1 | EG:EG0003.4 PROTEIN-RELATED |
LLU|FUN_000419-T1 | EG:EG0003.4 PROTEIN-RELATED |
LLU|FUN_000420-T1 | EG:EG0003.4 PROTEIN-RELATED |
LLU|FUN_000421-T1 | LEUCINE-RICH REPEAT AND IQ DOMAIN-CONTAINING PROTEIN 1-RELATED |
LLU|FUN_000422-T1 | DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL |
LLU|FUN_000423-T1 | |
LLU|FUN_000424-T1 | GTP-BINDING PROTEIN ALPHA SUBUNIT |
LLU|FUN_000425-T1 | GTP-BINDING PROTEIN ALPHA SUBUNIT |
LLU|FUN_000426-T1 | PROTEASE M3 THIMET OLIGOPEPTIDASE-RELATED |
LLU|FUN_000427-T1 | ADENYLOSUCCINATE LYASE |
LLU|FUN_000428-T1 | ANKYRIN REPEAT AND DEATH DOMAIN-CONTAINING PROTEIN |
LLU|FUN_000429-T1 | IMPORTIN BETA |
LLU|FUN_000430-T1 | MAMMALIAN EPENDYMIN-RELATED PROTEIN 1 |
LLU|FUN_000431-T1 | MAMMALIAN EPENDYMIN-RELATED PROTEIN 1 |
LLU|FUN_000432-T1 | |
LLU|FUN_000433-T1 | |
LLU|FUN_000434-T1 | MAMMALIAN EPENDYMIN-RELATED PROTEIN 1 |
LLU|FUN_000435-T1 | MAMMALIAN EPENDYMIN-RELATED PROTEIN 1 |
LLU|FUN_000436-T1 | |
LLU|FUN_000437-T1 | MAMMALIAN EPENDYMIN-RELATED PROTEIN 1 |
LLU|FUN_000438-T1 | MAMMALIAN EPENDYMIN-RELATED PROTEIN 1 |
LLU|FUN_000439-T1 | MAMMALIAN EPENDYMIN-RELATED PROTEIN 1 |
LLU|FUN_000440-T1 | ADENYLOSUCCINATE LYASE |
LLU|FUN_000441-T1 | |
LLU|FUN_000442-T1 | NUCLEAR PROTEIN LOCALIZATION 4 |
LLU|FUN_000443-T1 | WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES WIPI -RELATED |
LLU|FUN_000444-T1 | |
LLU|FUN_000445-T1 | |
LLU|FUN_000446-T1 | UNCHARACTERIZED |
LLU|FUN_000447-T1 | TRANSMEMBRANE PROTEIN 72 |
LLU|FUN_000448-T1 | S-ANTIGEN PROTEIN |
LLU|FUN_000449-T1 | CARBON CATABOLITE REPRESSOR PROTEIN 4 |
LLU|FUN_000450-T1 | |
LLU|FUN_000451-T1 | - |
LLU|FUN_000452-T1 | 54S RIBOSOMAL PROTEIN L1, MITOCHONDRIAL |
LLU|FUN_000453-T1 | GLUTAMATE DEHYDROGENASE |