About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_000101-T1
LLU|FUN_000102-T1
LLU|FUN_000103-T1MULTIPLE PDZ DOMAIN PROTEIN
LLU|FUN_000104-T1ADP RIBOSYLATION FACTOR-RELATED
LLU|FUN_000105-T1UNCHARACTERIZED
LLU|FUN_000106-T1CENTROMERE PROTEIN C
LLU|FUN_000107-T1RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
LLU|FUN_000108-T1YL-1 PROTEIN TRANSCRIPTION FACTOR-LIKE 1
LLU|FUN_000109-T1MEIOSIS-SPECIFIC NUCLEAR STRUCTURAL PROTEIN 1
LLU|FUN_000110-T1CHROMATIN TARGET OF PRMT1 PROTEIN
LLU|FUN_000111-T1CGI-41 METHYLTRANSFERASE
LLU|FUN_000112-T1PROTEASE FAMILY S9B,C DIPEPTIDYL-PEPTIDASE IV-RELATED
LLU|FUN_000113-T1SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN
LLU|FUN_000115-T1DDB1- AND CUL4-ASSOCIATED FACTOR 12-RELATED
LLU|FUN_000116-T1ANKYRIN REPEAT FAMILY PROTEIN
LLU|FUN_000117-T1
LLU|FUN_000118-T1PERIOSTIN-RELATED
LLU|FUN_000119-T1UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
LLU|FUN_000120-T1MUCIN-17
LLU|FUN_000121-T1RAS-RELATED PROTEIN RAB
LLU|FUN_000122-T1UNCHARACTERIZED
LLU|FUN_000123-T1CYSTINOSIN
LLU|FUN_000124-T1
LLU|FUN_000125-T1
LLU|FUN_000126-T1GLUCOSAMINE 6-PHOSPHATE N-ACETYLTRANSFERASE
LLU|FUN_000127-T1GH11358P
LLU|FUN_000128-T1ENDONUCLEASE V
LLU|FUN_000129-T1PEPTIDOGLYCAN RECOGNITION PROTEIN
LLU|FUN_000130-T1LIPASE
LLU|FUN_000131-T1OS10G0105400 PROTEIN
LLU|FUN_000132-T1
LLU|FUN_000133-T1
LLU|FUN_000134-T1
LLU|FUN_000135-T1OS10G0105400 PROTEIN
LLU|FUN_000136-T1
LLU|FUN_000137-T1
LLU|FUN_000138-T1AMINO ACID TRANSPORTER
LLU|FUN_000139-T1AMINO ACID TRANSPORTER
LLU|FUN_000140-T1
LLU|FUN_000141-T1
LLU|FUN_000142-T1AMINO ACID TRANSPORTER
LLU|FUN_000143-T1EXPORTIN 4,7-RELATED
LLU|FUN_000144-T1
LLU|FUN_000145-T1
LLU|FUN_000146-T1RGD1565685 PROTEIN
LLU|FUN_000147-T1ARGINASE/AGMATINASE
LLU|FUN_000148-T1
LLU|FUN_000149-T1
LLU|FUN_000150-T1
LLU|FUN_000151-T1FL(2)D-ASSOCIATED COMPLEX COMPONENT
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