Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_000101-T1 | |
LLU|FUN_000102-T1 | |
LLU|FUN_000103-T1 | MULTIPLE PDZ DOMAIN PROTEIN |
LLU|FUN_000104-T1 | ADP RIBOSYLATION FACTOR-RELATED |
LLU|FUN_000105-T1 | UNCHARACTERIZED |
LLU|FUN_000106-T1 | CENTROMERE PROTEIN C |
LLU|FUN_000107-T1 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
LLU|FUN_000108-T1 | YL-1 PROTEIN TRANSCRIPTION FACTOR-LIKE 1 |
LLU|FUN_000109-T1 | MEIOSIS-SPECIFIC NUCLEAR STRUCTURAL PROTEIN 1 |
LLU|FUN_000110-T1 | CHROMATIN TARGET OF PRMT1 PROTEIN |
LLU|FUN_000111-T1 | CGI-41 METHYLTRANSFERASE |
LLU|FUN_000112-T1 | PROTEASE FAMILY S9B,C DIPEPTIDYL-PEPTIDASE IV-RELATED |
LLU|FUN_000113-T1 | SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN |
LLU|FUN_000115-T1 | DDB1- AND CUL4-ASSOCIATED FACTOR 12-RELATED |
LLU|FUN_000116-T1 | ANKYRIN REPEAT FAMILY PROTEIN |
LLU|FUN_000117-T1 | |
LLU|FUN_000118-T1 | PERIOSTIN-RELATED |
LLU|FUN_000119-T1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
LLU|FUN_000120-T1 | MUCIN-17 |
LLU|FUN_000121-T1 | RAS-RELATED PROTEIN RAB |
LLU|FUN_000122-T1 | UNCHARACTERIZED |
LLU|FUN_000123-T1 | CYSTINOSIN |
LLU|FUN_000124-T1 | |
LLU|FUN_000125-T1 | |
LLU|FUN_000126-T1 | GLUCOSAMINE 6-PHOSPHATE N-ACETYLTRANSFERASE |
LLU|FUN_000127-T1 | GH11358P |
LLU|FUN_000128-T1 | ENDONUCLEASE V |
LLU|FUN_000129-T1 | PEPTIDOGLYCAN RECOGNITION PROTEIN |
LLU|FUN_000130-T1 | LIPASE |
LLU|FUN_000131-T1 | OS10G0105400 PROTEIN |
LLU|FUN_000132-T1 | |
LLU|FUN_000133-T1 | |
LLU|FUN_000134-T1 | |
LLU|FUN_000135-T1 | OS10G0105400 PROTEIN |
LLU|FUN_000136-T1 | |
LLU|FUN_000137-T1 | |
LLU|FUN_000138-T1 | AMINO ACID TRANSPORTER |
LLU|FUN_000139-T1 | AMINO ACID TRANSPORTER |
LLU|FUN_000140-T1 | |
LLU|FUN_000141-T1 | |
LLU|FUN_000142-T1 | AMINO ACID TRANSPORTER |
LLU|FUN_000143-T1 | EXPORTIN 4,7-RELATED |
LLU|FUN_000144-T1 | |
LLU|FUN_000145-T1 | |
LLU|FUN_000146-T1 | RGD1565685 PROTEIN |
LLU|FUN_000147-T1 | ARGINASE/AGMATINASE |
LLU|FUN_000148-T1 | |
LLU|FUN_000149-T1 | |
LLU|FUN_000150-T1 | |
LLU|FUN_000151-T1 | FL(2)D-ASSOCIATED COMPLEX COMPONENT |