Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_000253-T1 | |
LLU|FUN_000254-T1 | DYNEIN LIGHT INTERMEDIATE CHAIN |
LLU|FUN_000255-T1 | UNCHARACTERIZED |
LLU|FUN_000256-T1 | E3 UBIQUITIN-PROTEIN LIGASE RNF8 |
LLU|FUN_000257-T1 | |
LLU|FUN_000258-T1 | TRANSIENT RECEPTOR POTENTIAL CHANNEL 4-ASSOCIATED PROTEIN TCPC4AP |
LLU|FUN_000259-T1 | CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 7 |
LLU|FUN_000260-T1 | BONUS, ISOFORM C-RELATED |
LLU|FUN_000261-T1 | CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 7 |
LLU|FUN_000262-T1 | |
LLU|FUN_000263-T1 | SERINE/THREONINE-PROTEIN KINASE |
LLU|FUN_000264-T1 | PHOSPHOETHANOLAMINE METHYLTRANSFERASE |
LLU|FUN_000265-T1 | MUCIN 4-RELATED |
LLU|FUN_000266-T1 | |
LLU|FUN_000267-T1 | MUCIN 4-RELATED |
LLU|FUN_000268-T1 | |
LLU|FUN_000269-T1 | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING |
LLU|FUN_000270-T1 | ATAXIN-7-LIKE PROTEIN 3 |
LLU|FUN_000271-T1 | CONTACTIN 5 |
LLU|FUN_000272-T1 | PROTEIN SIDEKICK |
LLU|FUN_000273-T1 | SEPIAPTERIN REDUCTASE |
LLU|FUN_000274-T1 | SEPIAPTERIN REDUCTASE |
LLU|FUN_000275-T1 | MULTIPLE PDZ DOMAIN PROTEIN |
LLU|FUN_000276-T1 | PDZ DOMAIN CONTAINING WHIRLIN AND HARMONIN-RELATED |
LLU|FUN_000277-T1 | PHOSPHATIDYLCHOLINE TRANSFER PROTEIN |
LLU|FUN_000278-T1 | PHOSPHOMANNOMUTASE 45A |
LLU|FUN_000279-T1 | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER |
LLU|FUN_000280-T1 | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER |
LLU|FUN_000281-T1 | NEUROTRANSMITTER GATED ION CHANNEL |
LLU|FUN_000282-T1 | |
LLU|FUN_000284-T1 | |
LLU|FUN_000285-T1 | |
LLU|FUN_000286-T1 | |
LLU|FUN_000287-T1 | |
LLU|FUN_000288-T1 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
LLU|FUN_000289-T1 | |
LLU|FUN_000290-T1 | ZINC FINGER PROTEIN |
LLU|FUN_000291-T1 | |
LLU|FUN_000292-T1 | |
LLU|FUN_000293-T1 | |
LLU|FUN_000294-T1 | |
LLU|FUN_000295-T1 | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 12 |
LLU|FUN_000296-T1 | |
LLU|FUN_000297-T1 | |
LLU|FUN_000298-T1 | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 12 |
LLU|FUN_000299-T1 | RING BOX |
LLU|FUN_000300-T1 | HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED |
LLU|FUN_000301-T1 | |
LLU|FUN_000302-T1 | |
LLU|FUN_000303-T1 |