About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.

Classification

Animalia (Kingdom); Annelida (Phylum); Polychaeta (Class); Sedentaria (Subclass); Canalipalpata (Infraclass); Sabellida (Order); Siboglinidae (Family); Lamellibrachia (Genus); Lamellibrachia luymesi (Species)

Original Name

Lamellibrachia luymesi van der Land & Nørrevang, 1975

Key Reference Paper

1. VAN DER LAND J. The systematic position of Lamellibrachia (Annelida, Vestimentifera)[J]. Zeitschrift fur Zoologische Systematik und Evolutionsforschung, Sonderheft, 1975, 1975: 86-101. (Land et al., 1975)

Etymology

Not stated. Perhaps (from the locality information given) named after a research vessel named "Luymes", in turn named after the hydrographer Johan Lambertus Hendrikus Luymes

Distribution

continental slope off Guyana, S America, North Atlantic Ocean, 8.0167, -57.4° (8 1' N, 57 24' W) "Luymes" Guyana Shelf Exp. sta. 101, depth 500 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA51646795.80 373/24.140.1636.9238,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

<< First 1 2 3 4 5 6 7 8 9 10 Forward> Last>>        2016 pages in total

Gene IDDescription
LLU|FUN_000101-T1-
LLU|FUN_000102-T1-
LLU|FUN_000103-T1MULTIPLE PDZ DOMAIN PROTEIN
LLU|FUN_000104-T1ADP RIBOSYLATION FACTOR-RELATED
LLU|FUN_000105-T1UNCHARACTERIZED
LLU|FUN_000106-T1CENTROMERE PROTEIN C
LLU|FUN_000107-T1RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN
LLU|FUN_000108-T1YL-1 PROTEIN TRANSCRIPTION FACTOR-LIKE 1
LLU|FUN_000109-T1MEIOSIS-SPECIFIC NUCLEAR STRUCTURAL PROTEIN 1
LLU|FUN_000110-T1CHROMATIN TARGET OF PRMT1 PROTEIN
LLU|FUN_000111-T1CGI-41 METHYLTRANSFERASE
LLU|FUN_000112-T1PROTEASE FAMILY S9B,C DIPEPTIDYL-PEPTIDASE IV-RELATED
LLU|FUN_000113-T1SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN
LLU|FUN_000115-T1DDB1- AND CUL4-ASSOCIATED FACTOR 12-RELATED
LLU|FUN_000116-T1ANKYRIN REPEAT FAMILY PROTEIN
LLU|FUN_000117-T1-
LLU|FUN_000118-T1PERIOSTIN-RELATED
LLU|FUN_000119-T1UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
LLU|FUN_000120-T1MUCIN-17
LLU|FUN_000121-T1RAS-RELATED PROTEIN RAB

Results of comparison between Lamellibrachia luymesi and its nearshore relatives from the paper (Li et al., 2019)

<< First 1 2 3 4 5 Forward> Last>>        5 pages in total

Annotation IDDescriptionTypeSubtypeGeneRatioEvolution TypeP-valueQ-value
PTHR44025LOW-DENSITY LIPOPROTEIN RECEPTOR-RELATED PROTEINPANTHER--expanded--
PTHR12011G-PROTEIN COUPLED RECEPTORPANTHER--expanded--
PTHR11177CHITINASEPANTHER--expanded--
PTHR28576PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEINPANTHER--expanded--
PTHR19325COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAININGPANTHER--expanded--
PTHR19325COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAININGPANTHER--expanded--
PTHR11119XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBERPANTHER--expanded--
PTHR10877POLYCYSTIN-RELATEDPANTHER--expanded--
PTHR13802MUCIN 4-RELATEDPANTHER--expanded--
PTHR10131TNF RECEPTOR ASSOCIATED FACTORPANTHER--expanded--
PTHR11908XANTHINE DEHYDROGENASEPANTHER--expanded--
PTHR11709MULTI-COPPER OXIDASEPANTHER--expanded--
PTHR14647GALACTOSE-3-O-SULFOTRANSFERASEPANTHER--expanded--
PTHR23033BETA1,3-GALACTOSYLTRANSFERASEPANTHER--expanded--
PTHR10283SOLUTE CARRIER FAMILY 13 MEMBERPANTHER--expanded--
PTHR24039FIBRILLINPANTHER--expanded--
PTHR14453PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEINPANTHER--expanded--
PTHR14453PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEINPANTHER--expanded--
PTHR24221ABC TRANSPORTERPANTHER--expanded--
PTHR24033FAMILY NOT NAMEDPANTHER--expanded--
PTHR10579CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATORPANTHER--expanded--
PTHR11039NEBULINPANTHER--expanded--
TOP