About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_000253-T1
LLU|FUN_000254-T1DYNEIN LIGHT INTERMEDIATE CHAIN
LLU|FUN_000255-T1UNCHARACTERIZED
LLU|FUN_000256-T1E3 UBIQUITIN-PROTEIN LIGASE RNF8
LLU|FUN_000257-T1
LLU|FUN_000258-T1TRANSIENT RECEPTOR POTENTIAL CHANNEL 4-ASSOCIATED PROTEIN TCPC4AP
LLU|FUN_000259-T1CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 7
LLU|FUN_000260-T1BONUS, ISOFORM C-RELATED
LLU|FUN_000261-T1CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 7
LLU|FUN_000262-T1
LLU|FUN_000263-T1SERINE/THREONINE-PROTEIN KINASE
LLU|FUN_000264-T1PHOSPHOETHANOLAMINE METHYLTRANSFERASE
LLU|FUN_000265-T1MUCIN 4-RELATED
LLU|FUN_000266-T1
LLU|FUN_000267-T1MUCIN 4-RELATED
LLU|FUN_000268-T1
LLU|FUN_000269-T1RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING
LLU|FUN_000270-T1ATAXIN-7-LIKE PROTEIN 3
LLU|FUN_000271-T1CONTACTIN 5
LLU|FUN_000272-T1PROTEIN SIDEKICK
LLU|FUN_000273-T1SEPIAPTERIN REDUCTASE
LLU|FUN_000274-T1SEPIAPTERIN REDUCTASE
LLU|FUN_000275-T1MULTIPLE PDZ DOMAIN PROTEIN
LLU|FUN_000276-T1PDZ DOMAIN CONTAINING WHIRLIN AND HARMONIN-RELATED
LLU|FUN_000277-T1PHOSPHATIDYLCHOLINE TRANSFER PROTEIN
LLU|FUN_000278-T1PHOSPHOMANNOMUTASE 45A
LLU|FUN_000279-T1DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER
LLU|FUN_000280-T1DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER
LLU|FUN_000281-T1NEUROTRANSMITTER GATED ION CHANNEL
LLU|FUN_000282-T1
LLU|FUN_000284-T1
LLU|FUN_000285-T1
LLU|FUN_000286-T1
LLU|FUN_000287-T1
LLU|FUN_000288-T1CXC DOMAIN-CONTAINING PROTEIN-RELATED
LLU|FUN_000289-T1
LLU|FUN_000290-T1ZINC FINGER PROTEIN
LLU|FUN_000291-T1
LLU|FUN_000292-T1
LLU|FUN_000293-T1
LLU|FUN_000294-T1
LLU|FUN_000295-T1MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 12
LLU|FUN_000296-T1
LLU|FUN_000297-T1
LLU|FUN_000298-T1MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 12
LLU|FUN_000299-T1RING BOX
LLU|FUN_000300-T1HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
LLU|FUN_000301-T1
LLU|FUN_000302-T1
LLU|FUN_000303-T1
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