Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Animalia (Kingdom); Annelida (Phylum); Polychaeta (Class); Sedentaria (Subclass); Canalipalpata (Infraclass); Sabellida (Order); Siboglinidae (Family); Lamellibrachia (Genus); Lamellibrachia luymesi (Species)
Lamellibrachia luymesi van der Land & Nørrevang, 1975
1. VAN DER LAND J. The systematic position of Lamellibrachia (Annelida, Vestimentifera)[J]. Zeitschrift fur Zoologische Systematik und Evolutionsforschung, Sonderheft, 1975, 1975: 86-101. (Land et al., 1975)
Not stated. Perhaps (from the locality information given) named after a research vessel named "Luymes", in turn named after the hydrographer Johan Lambertus Hendrikus Luymes
continental slope off Guyana, S America, North Atlantic Ocean, 8.0167, -57.4° (8 1' N, 57 24' W) "Luymes" Guyana Shelf Exp. sta. 101, depth 500 m
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness (%) | Scaffold/Contig N50 (kb) | GC content (%) | Repeat Rate (%) | Gene Number |
---|---|---|---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | 95.80 | 373/24.1 | 40.16 | 36.92 | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_000001-T1 | HISTONE H3 |
LLU|FUN_000002-T1 | HISTONE H3 |
LLU|FUN_000003-T1 | KETOACID-COENZYME A TRANSFERASE |
LLU|FUN_000004-T1 | AB HYDROLASE SUPERFAMILY PROTEIN C4A8.06C |
LLU|FUN_000005-T1 | - |
LLU|FUN_000006-T1 | TGF-BETA FAMILY |
LLU|FUN_000007-T1 | - |
LLU|FUN_000008-T1 | - |
LLU|FUN_000009-T1 | - |
LLU|FUN_000010-T1 | - |
LLU|FUN_000011-T1 | - |
LLU|FUN_000012-T1 | - |
LLU|FUN_000013-T1 | - |
LLU|FUN_000014-T1 | - |
LLU|FUN_000015-T1 | - |
LLU|FUN_000016-T1 | - |
LLU|FUN_000017-T1 | - |
LLU|FUN_000018-T1 | CENTROSOMAL PROTEIN-RELATED |
LLU|FUN_000019-T1 | - |
LLU|FUN_000020-T1 | - |
Annotation ID | Description | Type | Subtype | GeneRatio | Evolution Type | P-value | Q-value |
---|---|---|---|---|---|---|---|
PTHR34415 | FAMILY NOT NAMED | PANTHER | - | - | expanded | - | - |
PTHR14453 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN | PANTHER | - | - | expanded | - | - |
PTHR14453 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN | PANTHER | - | - | expanded | - | - |
PTHR13800 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6 | PANTHER | - | - | expanded | - | - |
PTHR43645 | UPF0214 PROTEIN YFEW | PANTHER | - | - | expanded | - | - |
PTHR43998 | FILAMIN | PANTHER | - | - | expanded | - | - |
PTHR44131 | CUB DOMAIN-CONTAINING PROTEIN | PANTHER | - | - | expanded | - | - |
PTHR44097 | PROTEIN SERRATE | PANTHER | - | - | expanded | - | - |
PTHR10166 | VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED | PANTHER | - | - | expanded | - | - |
PTHR22605 | AAA+ ATPASE, CORE DOMAIN-CONTAINING PROTEIN | PANTHER | - | - | expanded | - | - |
PTHR23097 | TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER | PANTHER | - | - | expanded | - | - |
PTHR23232 | KRAB DOMAIN C2H2 ZINC FINGER | PANTHER | - | - | expanded | - | - |
PTHR18966 | IONOTROPIC GLUTAMATE RECEPTOR | PANTHER | - | - | expanded | - | - |
PTHR12622 | DELTEX-RELATED | PANTHER | - | - | expanded | - | - |
PTHR23024 | MEMBER OF 'GDXG' FAMILY OF LIPOLYTIC ENZYMES | PANTHER | - | - | expanded | - | - |
PTHR11106 | GANGLIOSIDE INDUCED DIFFERENTIATION ASSOCIATED PROTEIN 2-RELATED | PANTHER | - | - | expanded | - | - |
PTHR10887 | DNA2/NAM7 HELICASE FAMILY | PANTHER | - | - | expanded | - | - |
PTHR16897 | CARNOSINE N-METHYLTRANSFERASE | PANTHER | - | - | expanded | - | - |
PTHR16897 | CARNOSINE N-METHYLTRANSFERASE | PANTHER | - | - | expanded | - | - |
PTHR16897 | CARNOSINE N-METHYLTRANSFERASE | PANTHER | - | - | expanded | - | - |
PTHR16897 | HISTAMINE N-METHYLTRANSFERASE | PANTHER | - | - | expanded | - | - |
PTHR10796 | PATCHED-RELATED | PANTHER | - | - | expanded | - | - |
PTHR10796 | PATCHED-RELATED | PANTHER | - | - | expanded | - | - |
PTHR23302 | TRANSMEMBRANE CHANNEL-RELATED | PANTHER | - | - | expanded | - | - |
PTHR12042 | LACTOSYLCERAMIDE 4-ALPHA-GALACTOSYLTRANSFERASE ALPHA- 1,4-GALACTOSY | PANTHER | - | - | expanded | - | - |