Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_022440-T1 | GRB2-ASSOCIATED AND REGULATOR OF MAPK PROTEIN FAMILY MEMBER |
LLU|FUN_022441-T1 | GRB2-ASSOCIATED AND REGULATOR OF MAPK PROTEIN FAMILY MEMBER |
LLU|FUN_022442-T1 | |
LLU|FUN_022443-T1 | GRB2-ASSOCIATED AND REGULATOR OF MAPK PROTEIN FAMILY MEMBER |
LLU|FUN_022444-T1 | GRB2-ASSOCIATED AND REGULATOR OF MAPK PROTEIN FAMILY MEMBER |
LLU|FUN_022445-T1 | GRB2-ASSOCIATED AND REGULATOR OF MAPK PROTEIN FAMILY MEMBER |
LLU|FUN_022446-T1 | |
LLU|FUN_022447-T1 | LD39211P |
LLU|FUN_022448-T1 | |
LLU|FUN_022449-T1 | ALPHA-(1,3)-FUCOSYLTRANSFERASE C-RELATED |
LLU|FUN_022450-T1 | ALPHA-(1,3)-FUCOSYLTRANSFERASE C-RELATED |
LLU|FUN_022451-T1 | |
LLU|FUN_022452-T1 | |
LLU|FUN_022453-T1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED |
LLU|FUN_022454-T1 | TYROSINE-PROTEIN KINASE RECEPTOR |
LLU|FUN_022455-T1 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
LLU|FUN_022456-T1 | |
LLU|FUN_022457-T1 | |
LLU|FUN_022458-T1 | |
LLU|FUN_022459-T1 | |
LLU|FUN_022460-T1 | 30S RIBOSOMAL PROTEIN S2 PROKARYOTIC AND ORGANELLAR |
LLU|FUN_022461-T1 | GEM-ASSOCIATED PROTEIN 4 |
LLU|FUN_022462-T1 | |
LLU|FUN_022463-T1 | OPSIN |
LLU|FUN_022464-T1 | |
LLU|FUN_022465-T1 | |
LLU|FUN_022466-T1 | GAMMA-SECRETASE SUBUNIT PEN-2 |
LLU|FUN_022467-T1 | U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT |
LLU|FUN_022468-T1 | SETA BINDING PROTEIN 1 |
LLU|FUN_022469-T1 | U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT |
LLU|FUN_022470-T1 | A1 CISTRON SPLICING FACTOR AAR2-RELATED |
LLU|FUN_022471-T1 | P53 INDUCED PROTEIN |
LLU|FUN_022472-T1 | 40S RIBOSOMAL PROTEIN S25 |
LLU|FUN_022473-T1 | MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM70 |
LLU|FUN_022474-T1 | |
LLU|FUN_022475-T1 | ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN |
LLU|FUN_022476-T1 | |
LLU|FUN_022477-T1 | |
LLU|FUN_022478-T1 | MEDIUM-CHAIN SPECIFIC ACYL-COA DEHYDROGENASE, MITOCHONDRIAL-RELATED |
LLU|FUN_022479-T1 | XENOTROPIC AND POLYTROPIC RETROVIRUS RECEPTOR 1-RELATED |
LLU|FUN_022480-T1 | ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 6 |
LLU|FUN_022481-T1 | |
LLU|FUN_022482-T1 | |
LLU|FUN_022483-T1 | |
LLU|FUN_022484-T1 | NUCLEAR HORMONE RECEPTOR |
LLU|FUN_022485-T1 | |
LLU|FUN_022486-T1 | |
LLU|FUN_022487-T1 | |
LLU|FUN_022488-T1 | |
LLU|FUN_022489-T1 |