Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_022290-T1 | HEN1 |
LLU|FUN_022291-T1 | AKNA DOMAIN-CONTAINING PROTEIN |
LLU|FUN_022292-T1 | PDZ DOMAIN CONTAINING WHIRLIN AND HARMONIN-RELATED |
LLU|FUN_022293-T1 | |
LLU|FUN_022294-T1 | PDZ DOMAIN CONTAINING WHIRLIN AND HARMONIN-RELATED |
LLU|FUN_022295-T1 | MONOCARBOXYLATE TRANSPORTER |
LLU|FUN_022296-T1 | |
LLU|FUN_022297-T1 | |
LLU|FUN_022298-T1 | DNA REPAIR PROTEIN SWI5 HOMOLOG |
LLU|FUN_022299-T1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 151 |
LLU|FUN_022300-T1 | |
LLU|FUN_022301-T1 | |
LLU|FUN_022302-T1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 151 |
LLU|FUN_022303-T1 | ATF6, ISOFORM C |
LLU|FUN_022304-T1 | |
LLU|FUN_022305-T1 | |
LLU|FUN_022306-T1 | PRESEQUENCE PROTEASE |
LLU|FUN_022307-T1 | TFIIH, POLYPEPTIDE 4 |
LLU|FUN_022308-T1 | VALYL-TRNA SYNTHETASES |
LLU|FUN_022309-T1 | |
LLU|FUN_022310-T1 | |
LLU|FUN_022311-T1 | GOLGI SNARE BET1-RELATED |
LLU|FUN_022312-T1 | RING FINGER AND CCCH-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN |
LLU|FUN_022313-T1 | |
LLU|FUN_022314-T1 | ECDYSONE-INDUCIBLE GENE E1, ISOFORM A |
LLU|FUN_022315-T1 | |
LLU|FUN_022316-T1 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
LLU|FUN_022317-T1 | ACYL-COA DEHYDROGENASE |
LLU|FUN_022318-T1 | |
LLU|FUN_022319-T1 | |
LLU|FUN_022320-T1 | RING-TYPE DOMAIN-CONTAINING PROTEIN |
LLU|FUN_022321-T1 | SACCHAROPINE DEHYDROGENASE |
LLU|FUN_022322-T1 | AMINOMETHYLTRANSFERASE |
LLU|FUN_022323-T1 | |
LLU|FUN_022324-T1 | |
LLU|FUN_022325-T1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
LLU|FUN_022326-T1 | |
LLU|FUN_022327-T1 | |
LLU|FUN_022328-T1 | KRUEPPEL-LIKE TRANSCRIPTION FACTOR |
LLU|FUN_022329-T1 | |
LLU|FUN_022330-T1 | CDP-DIACYLGLYCEROL--GLYCEROL-3-PHOSPHATE 3-PHOSPHATIDYLTRANSFERASE-RELATED |
LLU|FUN_022331-T1 | VACUOLAR MEMBRANE PROTEIN YPL162C |
LLU|FUN_022332-T1 | |
LLU|FUN_022333-T1 | POLYCOMB GROUP PROTEIN |
LLU|FUN_022334-T1 | UVRD / RECB / PCRA DNA HELICASE FAMILY MEMBER |
LLU|FUN_022335-T1 | |
LLU|FUN_022336-T1 | |
LLU|FUN_022337-T1 | |
LLU|FUN_022338-T1 | PLASMINOGEN-RELATED |
LLU|FUN_022339-T1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |