Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_022340-T1 | TENEURIN AND N-ACETYLGLUCOSAMINE-1-PHOSPHODIESTER ALPHA-N-ACETYLGLUCOSAMINIDASE |
LLU|FUN_022341-T1 | MULTIPLE EPIDERMAL GROWTH FACTOR-LIKE DOMAINS PROTEIN |
LLU|FUN_022342-T1 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
LLU|FUN_022343-T1 | CYSTEINE-RICH HYDROPHOBIC DOMAIN PROTEIN BRAIN X-LINKED PROTEIN |
LLU|FUN_022344-T1 | |
LLU|FUN_022345-T1 | |
LLU|FUN_022346-T1 | VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED |
LLU|FUN_022347-T1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
LLU|FUN_022348-T1 | |
LLU|FUN_022349-T1 | GLYCINE N-METHYLTRANSFERASE |
LLU|FUN_022350-T1 | TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED |
LLU|FUN_022351-T1 | |
LLU|FUN_022352-T1 | |
LLU|FUN_022353-T1 | |
LLU|FUN_022354-T1 | |
LLU|FUN_022355-T1 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
LLU|FUN_022356-T1 | |
LLU|FUN_022357-T1 | |
LLU|FUN_022358-T1 | |
LLU|FUN_022359-T1 | OS10G0105400 PROTEIN |
LLU|FUN_022360-T1 | |
LLU|FUN_022361-T1 | |
LLU|FUN_022362-T1 | SNAC DOMAIN-CONTAINING PROTEIN |
LLU|FUN_022363-T1 | OS10G0105400 PROTEIN |
LLU|FUN_022364-T1 | EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED |
LLU|FUN_022365-T1 | EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED |
LLU|FUN_022366-T1 | |
LLU|FUN_022367-T1 | |
LLU|FUN_022368-T1 | |
LLU|FUN_022369-T1 | P2X PURINOCEPTOR |
LLU|FUN_022370-T1 | EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED |
LLU|FUN_022371-T1 | HERMANSKY-PUDLAK SYNDROME 4 PROTEIN LIGHT-EAR PROTEIN-RELATED |
LLU|FUN_022372-T1 | |
LLU|FUN_022373-T1 | UNC-13-4A, ISOFORM B |
LLU|FUN_022374-T1 | RUS1 FAMILY PROTEIN C16ORF58 |
LLU|FUN_022375-T1 | DDE_TNP_1_7 DOMAIN-CONTAINING PROTEIN |
LLU|FUN_022376-T1 | |
LLU|FUN_022377-T1 | |
LLU|FUN_022378-T1 | |
LLU|FUN_022379-T1 | |
LLU|FUN_022380-T1 | RUS1 FAMILY PROTEIN C16ORF58 |
LLU|FUN_022381-T1 | |
LLU|FUN_022382-T1 | GAMMA GLUTAMYL TRANSPEPTIDASE |
LLU|FUN_022383-T1 | |
LLU|FUN_022384-T1 | GAMMA GLUTAMYL TRANSPEPTIDASE |
LLU|FUN_022385-T1 | |
LLU|FUN_022386-T1 | |
LLU|FUN_022387-T1 | |
LLU|FUN_022388-T1 | MEMBRANE-SPANNING 4-DOMAINS SUBFAMILY A MS4A -RELATED |
LLU|FUN_022389-T1 |