Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_022490-T1 | TYROSINE-PROTEIN KINASE RECEPTOR |
LLU|FUN_022491-T1 | |
LLU|FUN_022492-T1 | |
LLU|FUN_022493-T1 | RAW, ISOFORM A |
LLU|FUN_022494-T1 | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 22 |
LLU|FUN_022495-T1 | |
LLU|FUN_022496-T1 | RIBOSOMAL PROTEIN L7AE FAMILY MEMBER |
LLU|FUN_022497-T1 | PERSULFIDE DIOXYGENASE ETHE1 |
LLU|FUN_022498-T1 | ACROSIN-RELATED |
LLU|FUN_022499-T1 | PERSULFIDE DIOXYGENASE ETHE1 |
LLU|FUN_022500-T1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 15 |
LLU|FUN_022501-T1 | TRANSFORMING GROWTH FACTOR BETA REGULATED GENE 1 |
LLU|FUN_022502-T1 | |
LLU|FUN_022503-T1 | |
LLU|FUN_022504-T1 | NFRKB-RELATED |
LLU|FUN_022505-T1 | HEPARAN SULFATE 2-O-SULFOTRANSFERASE |
LLU|FUN_022506-T1 | NUCLEOPORIN NUP188 HOMOLOG |
LLU|FUN_022507-T1 | N 2 ,N 2 -DIMETHYLGUANOSINE TRNA METHYLTRANSFERASE |
LLU|FUN_022508-T1 | RNA HELICASE |
LLU|FUN_022509-T1 | GALACTOSE-3-O-SULFOTRANSFERASE |
LLU|FUN_022510-T1 | SODIUM-BILE ACID COTRANSPORTER |
LLU|FUN_022511-T1 | |
LLU|FUN_022512-T1 | |
LLU|FUN_022513-T1 | |
LLU|FUN_022514-T1 | SENSOR KINASE-RELATED |
LLU|FUN_022515-T1 | |
LLU|FUN_022516-T1 | |
LLU|FUN_022517-T1 | MUCIN 4-RELATED |
LLU|FUN_022518-T1 | MUCIN 4-RELATED |
LLU|FUN_022519-T1 | |
LLU|FUN_022520-T1 | 5-HYDROXYTRYPTAMINE RECEPTOR |
LLU|FUN_022521-T1 | |
LLU|FUN_022522-T1 | |
LLU|FUN_022523-T1 | |
LLU|FUN_022524-T1 | |
LLU|FUN_022525-T1 | |
LLU|FUN_022526-T1 | |
LLU|FUN_022527-T1 | |
LLU|FUN_022528-T1 | |
LLU|FUN_022529-T1 | DEHYDROGENASE/REDUCTASE SDR FAMILY MEMBER 7-RELATED |
LLU|FUN_022530-T1 | |
LLU|FUN_022531-T1 | |
LLU|FUN_022532-T1 | |
LLU|FUN_022533-T1 | GLUTATHIONE GAMMA-GLUTAMYLCYSTEINYLTRANSFERASE |
LLU|FUN_022534-T1 | 5'-NUCLEOTIDASE |
LLU|FUN_022535-T1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 14 |
LLU|FUN_022536-T1 | BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE |
LLU|FUN_022537-T1 | BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE |
LLU|FUN_022538-T1 | BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE |
LLU|FUN_022539-T1 | BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE |